PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G19400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1075aa MW: 122632 Da PI: 9.6219 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 108 | 184 | 16 | 98 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ k fa++ g s +le ++g++++v++ +k ++ v+++GW+ F+ a +L++gD++ F ++g+s f +v++f+ ORUFI12G19400.1 108 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 184 4788999977744.4..35579**************..**********************************9999..999987 PP | |||||||
2 | B3 | 35.8 | 1.4e-11 | 341 | 423 | 9 | 92 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 + +sg lv+ k++a ++ ++ +++t++l ++ g ++W++ l + + y l++GW +F + n L+egD++vF+ +++ ++ l ORUFI12G19400.1 341 TSVASGSLVFCKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRCNLLQEGDICVFEASKSkRGVAL 423 4556778***********888..4558888887777*******..8888888*************************8876444444 PP | |||||||
3 | B3 | 40.9 | 3.7e-13 | 485 | 583 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f++v+ +s+ ++++ l+++ k+a+++ k + ++l+ e+ + + l ++ + + + l kGW +Fv++n+L+ D+++F+l+++ ++ ++ ORUFI12G19400.1 485 FLSVMRSSNCTRQSSLCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTM 576 7889999999999*************544345..5666663455778888877999999***************************999***** PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++rk ORUFI12G19400.1 577 TVHIIRK 583 ****997 PP | |||||||
4 | B3 | 61 | 2e-19 | 612 | 699 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kv+ +k+g +++p kfa+++gg+ s t++le+++g+++ev++ k + vl++GW++F++a +L+ gD++vF ++g+s f +v ORUFI12G19400.1 612 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 696 67777..6678887.********9999994..559***************..**********************************9999..66 PP EEE CS B3 95 kvf 97 ++ ORUFI12G19400.1 697 WIY 699 655 PP | |||||||
5 | B3 | 41.5 | 2.4e-13 | 826 | 909 | 6 | 93 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + + + + g+l ++k++a ++ ++k+e t++l + ++ +W++ l + + y l++GW +F + n+L+egD++vF+ ++++++ v ORUFI12G19400.1 826 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 909 5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP | |||||||
6 | B3 | 40.4 | 5.1e-13 | 986 | 1072 | 13 | 100 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100 s+ ++++ k+a+++ e++ +++ + ++s++ k ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++ ++v+++rks ORUFI12G19400.1 986 SRYMCFSAKYAAKYlP--REKN-KIMRLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 1072 5667888899999942..3344.455555566777777777999999***************************999*********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-15 | 94 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.0E-5 | 97 | 186 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-16 | 98 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-10 | 109 | 184 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.03E-14 | 112 | 184 | No hit | No description |
PROSITE profile | PS50863 | 10.278 | 128 | 186 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-14 | 326 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-15 | 327 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.40E-11 | 332 | 429 | No hit | No description |
PROSITE profile | PS50863 | 10.644 | 333 | 431 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0012 | 335 | 431 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-9 | 341 | 423 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-16 | 477 | 583 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-18 | 478 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-14 | 483 | 582 | No hit | No description |
Pfam | PF02362 | 2.8E-12 | 485 | 583 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.248 | 485 | 584 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-6 | 485 | 584 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-22 | 606 | 704 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-22 | 608 | 704 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.465 | 609 | 702 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.74E-20 | 610 | 700 | No hit | No description |
Pfam | PF02362 | 2.0E-17 | 612 | 698 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-16 | 612 | 702 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-17 | 815 | 914 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-17 | 815 | 913 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.89E-11 | 820 | 901 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 821 | 916 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-6 | 822 | 919 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-10 | 827 | 908 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-16 | 965 | 1072 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-19 | 966 | 1072 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.36E-13 | 971 | 1053 | No hit | No description |
SMART | SM01019 | 6.8E-6 | 973 | 1072 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.798 | 974 | 1072 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-11 | 985 | 1071 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1075 aa Download sequence Send to blast |
MMNNTPCGHE GSMSYHDNHL QSPSESSSFF NISLPPHSPF QELSGVDSTS LLVSDPPNMQ 60 QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG 120 LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILAF GYSGNSHFKV 180 QIFNPSNCEK ELSCVVMNRS ISDDNHRQSP RRERMNKPST TCMDCITNHY WLHMDDRERY 240 FFKVMMSVSD IKDELAIPKK FAANVRGKIP EQVRLEVSDD VPSSEDIKDP MSSGGLQKSK 300 KSCYVLPMLY NMTSAQESEV LALEKKIQPQ IPLYITAMDK TSVASGSLVF CKDYAVRYLL 360 DQNRTIKLCQ SGGSKTWDIS LDMDTDDLYA LSTGWLDFFR CNLLQEGDIC VFEASKSKRG 420 VALTFHPFKE SHCPKSSEYT LSTKSPTRRV PKRDYFATNL TNLTDQQERK VKNKIKSIQS 480 DIPIFLSVMR SSNCTRQSSL CFSVKYASKY LPHKDQNMRL RLPETKYKCK AALHIDTSTN 540 LHKLLKGWGK FVNDNKLEIH DICLFQLMKN KKKLTMTVHI IRKGEMEKSH RVCKNCVANH 600 YWLHMDNHGK SFIKVMITDF KNGVTIPAKF ARNFGGQMSG TVKLETRNGK TYEVQVAKEL 660 NNLVLRSGWE RFASAYELEK GDILVFIYSG NSHFKVWIYD PSACEKGLPC IITEQLPRVQ 720 QRSISHNNHT QLKRNAKSAK LYVDSSGHSK ETSEINPANS PSWKPTERVP SSEELDEPVD 780 LANVQKATKS FYSLPRMCNM TSAQKAEVDA LEKRIKPQIP FYITVMDKAS ATDGLLAISK 840 DYAVSYLLDK NETIKLCHSG RSMTWDISLD IDTDDQYALS TGWLDFIRNN HLQEGDICVF 900 EASKNKRGVA LIFHPLKQSH HPKPPGCVPS TKFPRHGVSK PNYIVSRFTT LSGQLKIKVE 960 AKVQAIQSEI PIFVAVMRES FIRGRSRYMC FSAKYAAKYL PREKNKIMRL RLPNKSYKYK 1020 AVFKINNKVH KLGGGWGKFV DDNKIKLGDI CLFQLMKNKK KLMMMVHIIR KSEFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241993 | 0.0 | AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878051.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 | ||||
Swissprot | Q2QMT7 | 0.0 | Y1214_ORYSJ; B3 domain-containing protein Os12g0591400 | ||||
TrEMBL | A0A0E0RJF3 | 0.0 | A0A0E0RJF3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G19400.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-22 | B3 family protein |