PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1075aa    MW: 122632 Da    PI: 9.6219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-121081841698
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  ORUFI12G19400.1 108 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 184
                      4788999977744.4..35579**************..**********************************9999..999987 PP

2B335.81.4e-11341423992
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       + +sg lv+ k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  ORUFI12G19400.1 341 TSVASGSLVFCKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRCNLLQEGDICVFEASKSkRGVAL 423
                      4556778***********888..4558888887777*******..8888888*************************8876444444 PP

3B340.93.7e-13485583199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++v+ +s+ ++++ l+++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ ++
  ORUFI12G19400.1 485 FLSVMRSSNCTRQSSLCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTM 576
                      7889999999999*************544345..5666663455778888877999999***************************999***** PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++rk
  ORUFI12G19400.1 577 TVHIIRK 583
                      ****997 PP

4B3612e-19612699197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++gg+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v
  ORUFI12G19400.1 612 FIKVM--ITDFKNG-VTIPAKFARNFGGQM--SGTVKLETRNGKTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 696
                      67777..6678887.********9999994..559***************..**********************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  ORUFI12G19400.1 697 WIY 699
                      655 PP

5B341.52.4e-13826909693
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  ORUFI12G19400.1 826 MDKASATDGLLAISKDYAVSYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 909
                      5566778899***********888767..56665536678899999..4444434*************************8887666..3 PP

6B340.45.1e-13986107213100
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-SS CS
               B3   13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrks 100 
                       s+ ++++ k+a+++     e++ +++   + ++s++ k  ++ + + + l++GW +Fv++n++k gD+++F+l+++ ++  ++v+++rks
  ORUFI12G19400.1  986 SRYMCFSAKYAAKYlP--REKN-KIMRLRLPNKSYKYKAVFKINNKVHKLGGGWGKFVDDNKIKLGDICLFQLMKNkKKLMMMVHIIRKS 1072
                       5667888899999942..3344.455555566777777777999999***************************999*********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1594188IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-597186IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1698188IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-10109184IPR003340B3 DNA binding domain
CDDcd100173.03E-14112184No hitNo description
PROSITE profilePS5086310.278128186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14326430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-15327431IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-11332429No hitNo description
PROSITE profilePS5086310.644333431IPR003340B3 DNA binding domain
SMARTSM010190.0012335431IPR003340B3 DNA binding domain
PfamPF023624.0E-9341423IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16477583IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18478584IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-14483582No hitNo description
PfamPF023622.8E-12485583IPR003340B3 DNA binding domain
PROSITE profilePS508639.248485584IPR003340B3 DNA binding domain
SMARTSM010193.3E-6485584IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-22606704IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-22608704IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465609702IPR003340B3 DNA binding domain
CDDcd100171.74E-20610700No hitNo description
PfamPF023622.0E-17612698IPR003340B3 DNA binding domain
SMARTSM010192.6E-16612702IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-17815914IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-17815913IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-11820901No hitNo description
PROSITE profilePS5086312.379821916IPR003340B3 DNA binding domain
SMARTSM010195.5E-6822919IPR003340B3 DNA binding domain
PfamPF023622.4E-10827908IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-169651072IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-199661072IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-139711053No hitNo description
SMARTSM010196.8E-69731072IPR003340B3 DNA binding domain
PROSITE profilePS508639.7989741072IPR003340B3 DNA binding domain
PfamPF023621.6E-119851071IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MMNNTPCGHE GSMSYHDNHL QSPSESSSFF NISLPPHSPF QELSGVDSTS LLVSDPPNMQ  60
QFCLRCSWTN PKRLAKPSLA IASLSHQHLA FDKTRCMFIL KIENDTLKTI LKMFAKNVQG  120
LISGVAKLEV PDGKTYDVEI SKEHNELVFR SGWEVFAIAY ELEQGDILAF GYSGNSHFKV  180
QIFNPSNCEK ELSCVVMNRS ISDDNHRQSP RRERMNKPST TCMDCITNHY WLHMDDRERY  240
FFKVMMSVSD IKDELAIPKK FAANVRGKIP EQVRLEVSDD VPSSEDIKDP MSSGGLQKSK  300
KSCYVLPMLY NMTSAQESEV LALEKKIQPQ IPLYITAMDK TSVASGSLVF CKDYAVRYLL  360
DQNRTIKLCQ SGGSKTWDIS LDMDTDDLYA LSTGWLDFFR CNLLQEGDIC VFEASKSKRG  420
VALTFHPFKE SHCPKSSEYT LSTKSPTRRV PKRDYFATNL TNLTDQQERK VKNKIKSIQS  480
DIPIFLSVMR SSNCTRQSSL CFSVKYASKY LPHKDQNMRL RLPETKYKCK AALHIDTSTN  540
LHKLLKGWGK FVNDNKLEIH DICLFQLMKN KKKLTMTVHI IRKGEMEKSH RVCKNCVANH  600
YWLHMDNHGK SFIKVMITDF KNGVTIPAKF ARNFGGQMSG TVKLETRNGK TYEVQVAKEL  660
NNLVLRSGWE RFASAYELEK GDILVFIYSG NSHFKVWIYD PSACEKGLPC IITEQLPRVQ  720
QRSISHNNHT QLKRNAKSAK LYVDSSGHSK ETSEINPANS PSWKPTERVP SSEELDEPVD  780
LANVQKATKS FYSLPRMCNM TSAQKAEVDA LEKRIKPQIP FYITVMDKAS ATDGLLAISK  840
DYAVSYLLDK NETIKLCHSG RSMTWDISLD IDTDDQYALS TGWLDFIRNN HLQEGDICVF  900
EASKNKRGVA LIFHPLKQSH HPKPPGCVPS TKFPRHGVSK PNYIVSRFTT LSGQLKIKVE  960
AKVQAIQSEI PIFVAVMRES FIRGRSRYMC FSAKYAAKYL PREKNKIMRL RLPNKSYKYK  1020
AVFKINNKVH KLGGGWGKFV DDNKIKLGDI CLFQLMKNKK KLMMMVHIIR KSEFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT70.0Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLA0A0E0RJF30.0A0A0E0RJF3_ORYRU; Uncharacterized protein
STRINGORUFI12G19400.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-22B3 family protein