PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI12G19370.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 265aa MW: 26597.4 Da PI: 9.6173

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI12G19370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.7	6.8e-35	51	105	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + ORUFI12G19370.1 51 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 105 68**************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	51	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.512	51	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-30	51	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEAPLHQSPV PLLPPPPPPP RVVGVQQQQQ QEAVVPPPPA MAAAAGGGGR EQCPRCASRD 60 TKFCYYNNYN TAQPRHFCRA CRRYWTLGGS LRNVPIGGST RKRPRPSRPA RAAVAAAIAA 120 AAAASASGSQ IAAQQQQAPP VVMSQHEAAA AAAAASGGGG GDGLLVSLLG AAPVLEGRLG 180 GGIGVDLLGG EQLGFGAMAM PPAPLLWPAR VLEGGDAWKS AAAAAGVSYS PFPALWQELA 240 AAAPVELAGG GGLLRHGGGG APQLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	105	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL954829	0.0	AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878036.1	0.0	dof zinc finger protein MNB1A-like
TrEMBL	A0A0E0RJF0	0.0	A0A0E0RJF0_ORYRU; Uncharacterized protein
TrEMBL	Q2QMU5	0.0	Q2QMU5_ORYSJ; Dof domain, zinc finger family protein
STRING	ORUFI12G19370.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-25	DOF zinc finger protein 1