PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G10940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 436aa MW: 47160.6 Da PI: 6.7816 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.3 | 1.8e-20 | 9 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 GfrF+P++ee++++yL + ++g++ + +e i+++d+y + eP+dL k +++ + + +fF+ ++ + + +r++ g+W ++ + ORUFI12G10940.1 9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAdEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGTWVSQSS- 98 67************************6655555*******9869****843443333334478***99998764...7999999*****8866. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++++g ++g k + f + g++tdW+m+ey+l ORUFI12G10940.1 99 KDLKNREGIKIGEVKNFRFK----KGGNNTDWLMEEYHL 133 888888*************8....567789*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-23 | 8 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.62 | 8 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 11 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA DEPRDLAGKY 60 APVARSPNGD RFFFTGCKRV KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKG 120 GNNTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV AHQESAALPP PQELVPPPQE 180 LAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA 240 PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD 300 PADIGMEMDE LMSFLDSTPV DGILPSQLYE YDELAKELED ALQGGGEEDG NDNPPRCATP 360 PPPRPASWPA MAPPPPPHPP ILTFPKDPRR GRGGCDKQSQ GGYRVLLKDM GDDQIDQQWL 420 KVSLKDYHHL MKSCKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731785 | 0.0 | AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619212.1 | 0.0 | vegetative cell wall protein gp1 | ||||
TrEMBL | A0A0E0RGI3 | 0.0 | A0A0E0RGI3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G10940.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04400.1 | 1e-13 | NAC domain containing protein 77 |