PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G07480.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 386aa    MW: 41280.4 Da    PI: 7.1228
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G07480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.83e-25300350252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      +k+++l+d++ yF+lpi++AAk+L++c+T+LK iCR++G+ RWP+Rk++s+
  ORUFI12G07480.1 300 TKQLQLSDIAPYFELPIAKAAKKLDICATALKGICRKHGVLRWPYRKVRSI 350
                      89**********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.086290372IPR003035RWP-RK domain
PfamPF020422.3E-21303350IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAGDGGNGAA DGGGEHLELD FFPSPLLDNF DYGGASTSSS AAPAPAPPQE DYCSGCQVLR  60
EVVHSNGLEI TKLCIHGGVA SGEFYHAILD VYRVSASAPA PALAHHSIVK GRGYDWVKQY  120
LTEYALRRAG GGFAVVQDSL SAFHDALCTT MAPCSSHVGD DDAHRRASSS AAAAAEERTN  180
GNGDHGQLVV HNAAVLPMLE SSRCLVAADQ AATTNNNGSG DRRLVVLDTT AIQPPASGCI  240
LHMAFPSKSY QSSRPTTLPS RYQECTCNPV AYEMDGVRSS LAPICWPELL GYNVTNREKT  300
KQLQLSDIAP YFELPIAKAA KKLDICATAL KGICRKHGVL RWPYRKVRSI DRQIATLRRS  360
GNGDATRNEI ETLIASRRRI VAGLDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318060.0AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9541600.0AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664445.11e-113PREDICTED: uncharacterized protein LOC102713973
TrEMBLA0A0E0RFB10.0A0A0E0RFB1_ORYRU; Uncharacterized protein
STRINGORUFI12G07480.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-13RWP-RK domain-containing protein