PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G05310.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 568aa    MW: 60080.9 Da    PI: 4.6624
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G05310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.96.9e-22301611127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksgy 82 
                      lppG+ F+Pt ee +++yL++ +++k++++ e+  ++ +d+y   P  L++        +   +w+f ++r+++++     +kr++r +++ g+
  ORUFI12G05310.1  30 LPPGVYFNPTREEAMHHYLNRWIARKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNCVYKWFFLCHRKRQSSrrttGNKRAERvVAAGGR 123
                      79*************************777664459999**********8534554222245599****999988744423458888667799* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      Wk     k+vl       g +++L fy  ++++++kt+W+m+ey+
  ORUFI12G05310.1 124 WKVEQG-KKVLG----GGGERDSLGFY--SSNSTKKTSWIMEEYT 161
                      **6644.57777....3599*******..556667*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2026188IPR003441NAC domain
PROSITE profilePS5100524.83630188IPR003441NAC domain
PfamPF023651.1E-1531161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDVDPPPPLP PPPPPPPPPA TPQQNKAVEL PPGVYFNPTR EEAMHHYLNR WIARKTIPEM  60
EAGFVAGADV YGDGPDALRR RHRPGYWCNC VYKWFFLCHR KRQSSRRTTG NKRAERVVAA  120
GGRWKVEQGK KVLGGGGERD SLGFYSSNST KKTSWIMEEY TSSAADGAAA ARGEEDRMEP  180
VLCKIYLSPR APAGEKRALF GEDGVAVGPD GRKRNARVTV LATLFDDVAA LLGQPVAAPP  240
LPAPGEQLGH GHGHFDDVAA RFGQVAVAAL PASGDLGHGD FDDDAAALLG QVAMAPAPAP  300
GHHQQGYVVA EAPLPESGYL GHYHHDGHLA QAAAAPEQDH YLGYHSHDAH VVDAEATPEQ  360
GYHDDAHVAV APAPEQGDLG HDQGHLAAAL TPEECGEIVG AYEFHPEMVQ MLSIGFAAPD  420
EQLLPQLLDP TGGGYDMASS AIAAVGDVNA YAAAAPTPRI RPNAAEAMAA TATAETMPPP  480
LDAVAAELSA PPRGLPPELA FSALPSVQQE PSCDDGDNFG ELVAEAMPPL IGENAGVDAG  540
SDEPLPDLAG IMTELDFGHD FFSNQHRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323760.0AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0REI50.0A0A0E0REI5_ORYRU; Uncharacterized protein
STRINGORUFI12G05310.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.19e-12NAC domain containing protein 63