PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI12G05190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 31883.5 Da PI: 8.2378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++q+G g+W++ ++ g+ R++k+c++rw +yl ORUFI12G05190.1 47 KGAWTKEEDQRLIAHINQHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 94 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.5e-19 | 100 | 144 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ ORUFI12G05190.1 100 RGNFTDEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 144 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 38 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.531 | 42 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-14 | 46 | 96 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.29E-29 | 46 | 141 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-15 | 47 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-11 | 49 | 94 | No hit | No description |
PROSITE profile | PS51294 | 29.116 | 95 | 149 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 98 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-18 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-17 | 100 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-13 | 102 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MHINSSSLSS PSSSSPLSTT IVVVAVFLSS IGAMGRSPCC EKAHTNKGAW TKEEDQRLIA 60 HINQHGEGCW RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFTDEEDEL IIKLHELLGN 120 KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL ARGLDPLTHR PLNAAAAVAG HHHLAAGGSS 180 CSPDATSGHS SCSDGDEYRG GIDLNLSISP PSSSSQPSSP PPPSHEAEAR RAGATASYTY 240 HHHYSETREK ICLCLNHLGL HGGDECSCGG SSASSSSSPP PATASSRAFT FANASSSTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-30 | 46 | 149 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88618 | 0.0 | D88618.1 Oryza sativa mRNA for OSMYB2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618922.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | P81393 | 2e-88 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0E0REG7 | 0.0 | A0A0E0REG7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G05190.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-86 | myb domain protein 4 |
Publications ? help Back to Top | |||
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