PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G04720.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 338aa    MW: 34745.2 Da    PI: 4.869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G04720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20152201255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  ORUFI12G04720.1 152 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 201
                      8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-30151211No hitNo description
SMARTSM003801.1E-36152215IPR001471AP2/ERF domain
PfamPF008473.8E-13152201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-33152210IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22152210IPR016177DNA-binding domain
PROSITE profilePS5103225.462152209IPR001471AP2/ERF domain
PRINTSPR003674.7E-12153164IPR001471AP2/ERF domain
PRINTSPR003674.7E-12175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCCTGDEVAG PGEQRRRPLD ADAGGDEGAV ATTSSSLLAA PMLSRRRQAE EMAAMVSALA  60
SVVAGGGGTS LPAKRPAERE PEEAVEGVWW SYCSELAAAA AAPSPAAPFP AGYVPSPGQH  120
SPASAAAGDE EELPSPSSAD SSGGGGGTAR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG  180
TFDTAEDAAR AYDGAALRFR GSRAKLNFPE HATLPPPPTT TTAAAHRCPP PPRTDALLES  240
QELSPGAGGG DPYSQYARFL QGSGGDGGEA AARPGGGASQ RTPPATTLLY SFEGDAASAA  300
CLWQPESGGG GMGWPATSPA AWLEYGFYPP PERRDTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-24151209463ATERF1
3gcc_A7e-24151209463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154ARKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071250.0AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.10.0ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0REA70.0A0A0E0REA7_ORYRU; Uncharacterized protein
STRINGORUFI12G04720.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-24ethylene response factor 110