PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G04260.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 644aa    MW: 65207.1 Da    PI: 6.2378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G04260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.25e-073733992854
                      HHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRak 54 
                      +++  LAk++gLt +qV++WF N R +
  ORUFI12G04260.1 373 SDKVMLAKQTGLTRSQVSNWFINARVR 399
                      56678********************88 PP
2BELL115.13.5e-37222293172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk+kLl++l+eV++rY+qy+ q+q v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+
  ORUFI12G04260.1 222 ERQELQMKKSKLLNMLDEVEQRYRQYHRQMQGVAAAFEAAAGAGSATTYTSLALRTISRQFRCLRDAIAAQV 293
                      79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-56154291IPR006563POX domain
PfamPF075268.0E-48159290IPR006563POX domain
SMARTSM003890.0029355407IPR001356Homeobox domain
PROSITE profilePS500719.815370403IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-15370409IPR009057Homeodomain-like
PfamPF059201.7E-10370399IPR008422Homeobox KN domain
CDDcd000863.49E-8370404No hitNo description
SuperFamilySSF466892.87E-10370410IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAAYFTGGGA GTDVVQAAGT DGLQTLYLMN PSYVGFTDAA AAPGGGAAAA NMVFLNSAVS  60
TLTPASFSRH HQPTPAAQHF VGIPLQSGYN LWGPDATGGN DVSPPRHGAQ QQAPAAAGTS  120
AAAVSPVLSL SSREAAPPVT VAAAAAAAAV PGGTDQEKVV MRSRYLKAAQ ELLDEAVSVS  180
KGAATAVKKK EDSEGGVSGG GGGAEDGGGS KSGAAAEMST AERQELQMKK SKLLNMLDEV  240
EQRYRQYHRQ MQGVAAAFEA AAGAGSATTY TSLALRTISR QFRCLRDAIA AQVRAASRGL  300
GEDCGDDEGG GGGGRTTVGS RLRFIDHQLR QQRAMQQLGM VHAAAAGGAA GGGGGGRLRP  360
PRLALRAFPP PDSDKVMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYA EETKAKEEEE  420
EEHDAAAAAA GDRGGVAEQA PSKPDDSAGI GMSSSSPAVA ASRSVGVHAG DQHAQASFYG  480
GGGGGGDDPF QCRIKKARTT TADEPAAAAA FHVSGEAAVS HRELLMKFTE AGGEGVRTGH  540
PHVNDDDDDV PGGAGGYSLF TAAQYGHQFG SDHFAFAGHG GGGGGGVSLT LGLPHGADQT  600
PASFLIGAGA GSDGGGAPVT TAGYDMNMQS TKSLAAQLMR DFVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208130.0AK120813.1 Oryza sativa Japonica Group cDNA clone:J023014M03, full insert sequence.
GenBankAK1208440.0AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619926.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
TrEMBLA0A0E0RE410.0A0A0E0RE41_ORYRU; Uncharacterized protein
STRINGORUFI12G04260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.36e-52BEL1-like homeodomain 1