PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G03890.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 226aa    MW: 24100.5 Da    PI: 6.2302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G03890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM415.8e-131967249
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk 49
                     +pGfrF Pt+eel+ +yL+++++g++  ++++vi+ vd+y ++P++L +
  ORUFI12G03890.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAA 67
                     69**********************995666778**************73 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-131669IPR003441NAC domain
PROSITE profilePS5100510.01818172IPR003441NAC domain
PfamPF023658.8E-62062IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY  60
HPSQLAALAG EASARDXSPP PPPTTTTTPL AWPCSCHQWR RRRRPPRANE LSVCRVYVST  120
GTLRSFDRRP LDAPPVISHH QPQLQQQQRQ LPSSAAAAAT NGNLIALAGG YECSHDSSGG  180
SSEDAAIDWS SLITAATDSA TAAVDFSFND DIDFSPAAVG PWAPQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095340.0AK109534.1 Oryza sativa Japonica Group cDNA clone:002-119-C08, full insert sequence.
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9546320.0AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankKP0331900.0KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619441.16e-58NAC domain-containing protein 90
TrEMBLA0A0E0RE021e-162A0A0E0RE02_ORYRU; Uncharacterized protein
STRINGORUFI12G03890.11e-163(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-15NAC domain containing protein 90