PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G02570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 365aa    MW: 39541.3 Da    PI: 4.3027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.52.3e-18171432126
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWka 85 
                      p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W++
  ORUFI12G02570.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTWHN 110
                      89************************87725569999**********8434344457789****999999884434445599**666699***9 PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                      + + + +        g ++ + +   rap  +kt+W+m+e 
  ORUFI12G02570.1 111 SQRRRVIEG-----YGDRQAFEY---RAPGNKKTNWLMEEI 143
                      988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-2114165IPR003441NAC domain
PROSITE profilePS5100521.90116165IPR003441NAC domain
PfamPF023651.2E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTNWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATADEEERQE  180
TNVVPGPKRL REAEATGYDA PAPEPPQPDG GCSYSGGGET SQATASMDYC CSTTTHTADD  240
TANAAAYYYG DVDAIKPDAY DGGDYGIGIN ADGELVLCGN GHGGIGTQGQ MPLAMQNTNG  300
EMTLFSPMNG YGVGFNEEVR QEPQVGGEVE MNDFFNDLFV DFDGAGDPNP NPNEGGDSHG  360
HILCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.15e-74PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLA0A0E0RDH70.0A0A0E0RDH7_ORYRU; Uncharacterized protein
STRINGORUFI12G02570.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-10NAC domain containing protein 53