PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G02480.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 577aa    MW: 62915.7 Da    PI: 6.8531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G02480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.16.9e-233855102127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                        GfrF+P+ e+l+++yL + ++gk+++ +e  i ++d+y +eP+dL  k     +   e+   +fF++ ++++ ++++k+r++ +g+W  + +
  ORUFI12G02480.1 385 SLGFRFNPSAEDLITFYLPRLIAGKPMKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQNS 476
                      57************************7775555**************843454222..255588**************************8865 PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       kev++k g +vg  + + f     ++g+ tdW+m+e +
  ORUFI12G02480.1 477 -KEVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHH 510
                      .999999*************7....78999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534742.78E-4521354IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.3E-6527352IPR029058Alpha/Beta hydrolase fold
PfamPF078591.4E-4796330IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF1019413.4E-24381531IPR003441NAC domain
PROSITE profilePS5100525.124384531IPR003441NAC domain
PfamPF023651.3E-12387510IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGVTVH DVATDHGVDV RLYLTTTTPA GRRPVLVHFH GGGFCLSHAA WSLYHRFYAR  120
LAVELDVAGI VSVVLPLAPE HRLPAAIDAG HAALLWLRDV ACGTSDTIAH HAVERLRDAA  180
DFSRVFLIGD SAGGVLVHNV AARAGEAGAE ALDPIRLAGG VLLHPGFILP EKSPSELENP  240
PTPFMTQETV DKFVMLALPV GTTSRDHPYT SPAAAVTAAE GAQLPPMLVM VAEEDMLRDA  300
QVEYGEAMAR AGKAVETVVS HGRGIGHVFY LNWFAVESHP VAAARARELV DALNKFPAQC  360
IRVFVSPIRL RNFDLMEKHV EKMLSLGFRF NPSAEDLITF YLPRLIAGKP MKDTEKFICR  420
ADVYGSEPSD LAGKFAPVPR CEKGGRFFFT SCKRHKGSST KKERTAGAGT WVRQNSKEVK  480
NKAGVKVGET QNFRFKKDGS YTDWLMEEHH CCRQQAVAGD EEPVICRMYV SPRAPPDSAA  540
RQESAAFVQQ QPAPQVSEPP CDKKKRDDVA EEAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A6e-276731553296CXE carboxylesterase
2o7v_A6e-276731553296CXE carboxylesterase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.10.0probable carboxylesterase 17
TrEMBLA0A0E0RDG60.0A0A0E0RDG6_ORYRU; Uncharacterized protein
STRINGORUFI12G02480.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.13e-12NAC domain containing protein 77