PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI12G01180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 652aa MW: 70760.4 Da PI: 6.8639 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.1 | 6.3e-22 | 129 | 189 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+ + + ++ Y +eH+++ ORUFI12G01180.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189 9************************9888889**********98776537899*****997 PP | |||||||
2 | WRKY | 55 | 1.7e-17 | 490 | 544 | 3 | 56 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 Dg++WrKYGqK++++s++prsYYrCt++ +C+++k v++ + d + Y+g+H ORUFI12G01180.1 490 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 544 9**************************99999********987.33322.2344443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-23 | 114 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-21 | 120 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-31 | 127 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.52 | 129 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-22 | 129 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-20 | 483 | 558 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-18 | 484 | 558 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-28 | 488 | 560 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.584 | 490 | 530 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-22 | 490 | 558 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 652 aa Download sequence Send to blast |
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LTGDDECLPP GLTTTTTVSG 60 GGGRRRGRKR VRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKLQTTTST 120 MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV 180 AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST 240 SSTSSETGNW SGQHGAYACR RQMIAADEEY CCWDTPATTT TSGSDGGNSS TCADQVIDLM 300 SGPIRSPLHI AADGNWDPAT LGSCPGSGAA CIIRLVLNHG IKEMKNSSNK RPLVADQWHP 360 SSVCCDHRAA LREIARGQSL VTQLRAIVLP ALHSDERGDL AAQMLEGILD CSRKAISELQ 420 LQLSSDSPHD DDGHLDDKRR VRKIVSSSSD DDDHSSSKAA EDHNAKPLRQ HKRRRFGDSV 480 SLETPVPHYD GHQWRKYGQK HINNSKHPRS YYRCTYRQEE KCKATKTVQQ REDLHHANSY 540 NGDHPVMYTV VYYGQHTCCK GPAASADDHV VVEASQISTD SHCQSPGSSS SELQAAAHAG 600 DSSQCSNISV TCSSSVVVED CNKLLDMLPA ADELTTDVLG SDPQPPQYST YL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-13 | 129 | 558 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 64 | 72 | RRGRKRVRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ298183 | 0.0 | DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620021.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A0E0RCX7 | 0.0 | A0A0E0RCX7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G01180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56400.1 | 7e-18 | WRKY DNA-binding protein 70 |