PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI11G24640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 26575.4 Da PI: 5.3692 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.2 | 8e-24 | 18 | 79 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++W KYGqK++ g+ +prsY+rC ++ gC ++k+v+ +++d ++++++Y geH+++ ORUFI11G24640.1 18 VDDGFSWVKYGQKDILGTMYPRSYFRCIHRqtkGCLATKQVQPTDDDHQILDVIYYGEHTCD 79 59**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-24 | 12 | 80 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.474 | 13 | 81 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-23 | 16 | 80 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-36 | 18 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-24 | 19 | 79 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MPSRETLRRI RVKVSSTVDD GFSWVKYGQK DILGTMYPRS YFRCIHRQTK GCLATKQVQP 60 TDDDHQILDV IYYGEHTCDQ SARSDDRQLK SSRPAASSNL QEPQQPGLEQ SRPAAKRRRK 120 TVRWKTQVRV SSVQDIQRRD GDPLLFDVVY HGDHTCSERA SLNEQVTWPR SSASSTEQSS 180 TITYTAAAGS VEDDEEGVTS ATNFLSMDDM LDLGGGDVID MAFPSFDFDA IDALLLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-16 | 18 | 77 | 14 | 75 | Disease resistance protein RRS1 |
5w3x_D | 8e-16 | 18 | 77 | 14 | 75 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0RC25 | 1e-175 | A0A0E0RC25_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI11G24640.1 | 1e-176 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 2e-24 | WRKY DNA-binding protein 30 |