PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G13960.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 504aa    MW: 54008.8 Da    PI: 8.2056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G13960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.2e-11119142326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  ORUFI11G13960.1 119 EPDCSYYMRTGLCRFGMTCKFNHP 142
                      789********************8 PP
2zf-CCCH38.61.8e-12164188327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ORUFI11G13960.1 164 QPECQYYLKTGTCKFGATCKFHHPR 188
                      799********************96 PP
3zf-CCCH36.48.9e-12210234327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  ORUFI11G13960.1 210 EKECAYYLRTGQCKFGSTCKFHHPQ 234
                      679********************97 PP
4zf-CCCH39.31.1e-12371396227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ORUFI11G13960.1 371 DQPECQFYMKTGDCKFGAVCKFHHPK 396
                      689*********************96 PP
5zf-CCCH38.22.4e-12416442127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  ORUFI11G13960.1 416 PGEPICTFYSRYGICKFGPNCKFDHPM 442
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.868116144IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4116143IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8119142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5121144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4122143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244161189IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6161188IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10164188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6164190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5167189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619207235IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5207234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6207235IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9210234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4213233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511369397IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5369396IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9371396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5372397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4375396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6414441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178415443IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7415442IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9417442IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4420440IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEGALC FGHSHNADMF YNVDTLSVAT  60
PLMGRISFGA AREGLSAAAT AVAVAASVIG PHSSDEEAMW QMNLGEAMEA GPYPERIGEP  120
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  180
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV  240
AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV  300
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  360
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI  420
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  480
SRRITHSDSQ QIPSGERGTE REAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0J1T80.0A0A0E0J1T8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R8960.0A0A0E0R896_ORYRU; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]