PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G12860.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 338aa    MW: 34768.1 Da    PI: 5.3953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G12860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000165375123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C +C k F ++     H+r+H
  ORUFI11G12860.1 53 FACRICRKEFDTRKAVDGHMRVH 75
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-65275No hitNo description
PfamPF139120.0485278IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3255380IPR007087Zinc finger, C2H2
SMARTSM003550.015375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-6127154No hitNo description
PfamPF139120.0011132155IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974132159IPR007087Zinc finger, C2H2
SMARTSM003556.3132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAMAARSTNG AASTMLLRRP HPLPGRNGSA IVAIASAAAA AAAAASTMAR EVFACRICRK  60
EFDTRKAVDG HMRVHRQQSI ATPKYNAADN SRVTVVAEPR TDLDLSGPHG SSSAPPGAGA  120
DGCHGGADSS KHRCRECGME WKTGFALGGH MRKHQTKETV TVNEKEPNVA GKHISLGPPP  180
LPDLTPAAAE VTSSEPLDQP PLLSMVVGAE VAAPALLALA NEAAALPPQD DQAEEEAAAE  240
AAAPAEAAAL RPVEAGAEAA DVGAAPEEPL LAPIAGMGTV RIFGFLVEKP APGDGSGGEG  300
VRLTTGNWQG CFVWGNPDPE GKHEKTMGSE GYYYVPDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.12e-95myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0E0R7X30.0A0A0E0R7X3_ORYRU; Uncharacterized protein
STRINGORUFI11G12860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-08C2H2 family protein