PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G12650.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 381aa    MW: 38040.5 Da    PI: 7.0199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G12650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000193658123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C +C k F ++     H+r+H
  ORUFI11G12650.1 36 FACRICRKEFDTRKAVDGHMRVH 58
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0553561IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-53558No hitNo description
PROSITE profilePS5015710.3253663IPR007087Zinc finger, C2H2
SMARTSM003550.013658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-5136165No hitNo description
Gene3DG3DSA:3.30.160.602.9E-4140154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1141165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621141170IPR007087Zinc finger, C2H2
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
SMARTSM003556.3210232IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-4210235IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEGARAPWRV VTAAAAQTST AAAAAAAAPT VAREVFACRI CRKEFDTRKA VDGHMRVHRQ  60
QSIANPKDNA ADNSPVTVVA EPRTDLDLSG PHGSSSAPPS PPAPPANPSN HNQAVGHQPA  120
AAAPNAGVVV VEGAPQKSLP YMCKMQGCDR AFPTHQGLGG HAAGHQNRSK AATAAAAASE  180
QGSSGAGADG CHGGAGSSKH RCGGADSSKH RCRECGMEWK TGFALGGHMR KHQKEKVTVN  240
EKEPNVAGKH ISLGPPPSPE LTPAAAEVTS LEPVDQPPVL LSMVVGAEVA APALLALANE  300
AAALPRSGRG SEEAAAQAAA PAEAAALPPV ESGADAADVG AAPEAPLPAP IAGMGAVRIF  360
GFLVEKPTPG DGSGGEGSAP A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.11e-163myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0E0R7U40.0A0A0E0R7U4_ORYRU; Uncharacterized protein
STRINGORUFI11G12650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.18e-06C2H2 family protein