PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G04770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 400aa    MW: 42749.9 Da    PI: 8.8316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G04770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.62.2e-181883253128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgk....rknratk..sgyWkatgkd 89 
                      p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ + ++   fF++ +++    g     + +ra+k   g+W+ +  +
  ORUFI11G04770.1 188 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHATSAHAFFVHDHESVGgGGGggrrKVQRAVKngGGVWRIQKGE 279
                      78******************99999777.55655.**********855444444445666666666532223332445555445889**99888 PP

              NAM  90 kevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++l+          +  +v  ++ L f+  r+ +++++ Wvmhey++
  ORUFI11G04770.1 280 VAILTIvrgggggggELDVVYKRRNLSFH--RRGESSSSGWVMHEYEI 325
                      88888777777664333449999******..5555679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030183.2E-472137IPR004265Plant disease resistance response protein
SuperFamilySSF1019411.31E-25175340IPR003441NAC domain
PROSITE profilePS5100522.351186341IPR003441NAC domain
PfamPF023652.0E-13188325IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MRMRVYWHDV VTGPNSTVAK VAEAPTSRAS ATVFGTVYVI DDPLTDGPSL TAPSRLVGHA  60
QGMYVSAGKE TMSLLMAMSF VFAADEPYNG SSVAIFGPNP ARPVREIPVV GGTGAFRFAR  120
GYCRATTYWY NAAGDATVPK RSARSLQEDE QTSWAAEAPA AVREDEERVA VAGMEAWRFG  180
FSRFSWFPAF KFDPTDADIV ASYLLPRALY GRGHAAVIQD DVSRCEPWTL MREHGHATSA  240
HAFFVHDHES VGGGGGGGRR KVQRAVKNGG GVWRIQKGEV AILTIVRGGG GGGGELDVVY  300
KRRNLSFHRR GESSSSGWVM HEYEITSPPL PATVLSRIRA TPRAKDKKLC IKEEPSCSTS  360
AAGERSGPNP DHTAAGAGDS ATANHNNTTS AATTTMAAAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340440.0AC134044.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616128.10.0NAC domain-containing protein 89
TrEMBLA0A0E0R4Y40.0A0A0E0R4Y4_ORYRU; Dirigent protein
STRINGORUFI11G04770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-09NTM1-like 8