PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G03720.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 425aa    MW: 44876.9 Da    PI: 6.9723
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G03720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-091291661954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  ORUFI11G03720.1 129 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 166
                      664459******************************88 PP
2BELL89.53.6e-297611872
             BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                     +V++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  ORUFI11G03720.1  7 QVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 61
                     79**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.2E-5159IPR006563POX domain
PfamPF075261.7E-24758IPR006563POX domain
PROSITE profilePS5007112.228107170IPR001356Homeobox domain
CDDcd000862.20E-12110171No hitNo description
SMARTSM003891.2E-9110174IPR001356Homeobox domain
SuperFamilySSF466891.84E-17111177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-29113176IPR009057Homeodomain-like
PfamPF059201.5E-18127166IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGWDGMQVEQ RYRQYHQQMQ VVVASFEAVA GGGSARTYTA LALRTISRQF RCLRDAIAGQ  60
VRAASRALGE AVDADGGCGR TVGSRLRYID HQLRQQRALQ QLGMMQSSAW RPQRGLPERS  120
VSILRAWLFE HFLHPYPKDS DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEET  180
KDQDGGGGAG AGDEGSKPGG SKGGGAGVNG GVVDSAAKMD SKAAHMESGG GVHPSLLELA  240
GDHQAQAGFY DDDDEDGGAA AALQQKLKKA RTEEQQQAAF HVSDVATLHA HAAAAAAARH  300
DEVSHRELLM KFMESGSAGA GAGAAARDHH HEHHGGVGYS LFAPAPYGQF ATEQFAFAGH  360
GGGGGGGGVS LTLGLPHGAE QTASFLMTSS NGSDGAGHVA GGGGYDMNMQ STKSFAAQLM  420
RDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-17116174563Homeobox protein Meis2
4xrm_B1e-17116174563Homeobox protein Meis2
5bng_A1e-17116174159Homeobox protein Meis2
5bng_B1e-17116174159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616922.10.0BEL1-like homeodomain protein 1
RefseqXP_015616923.10.0BEL1-like homeodomain protein 1
RefseqXP_015616924.10.0BEL1-like homeodomain protein 1
RefseqXP_015616925.10.0BEL1-like homeodomain protein 1
TrEMBLA0A0E0R4H60.0A0A0E0R4H6_ORYRU; Uncharacterized protein
STRINGORUFI11G03720.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-79BEL1-like homeodomain 1