PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G01500.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 812aa    MW: 90051.9 Da    PI: 6.5095
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G01500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51111381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+v+yL +++++ k+++  +i+ev+iyk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls
  ORUFI11G01500.1  11 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSILS 103
                      79****************************.88***************8777899**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  ORUFI11G01500.1 104 TpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 138
                      988899***************************98 PP
2NAM46.31.4e-14405454151
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 
                      lppGfrFhPtd e++ +yL +k  + +++    i+evd++k+ePwdLp+++
  ORUFI11G01500.1 405 LPPGFRFHPTDAEVILNYLLEKFINPSFTS-LPIHEVDLNKCEPWDLPTSM 454
                      79**********************999888.56**************9533 PP
3NAM1631.1e-504726111128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++
  ORUFI11G01500.1 472 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFN 564
                      79*************************888.56***************99999****************************************9 PP

              NAM  95 k.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                    +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  ORUFI11G01500.1 565 LqptsyggssnnknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 611
                      888999888887766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-637172IPR003441NAC domain
PROSITE profilePS5100559.09911172IPR003441NAC domain
PfamPF023651.0E-2512138IPR003441NAC domain
SuperFamilySSF1019413.66E-15400453IPR003441NAC domain
PROSITE profilePS510059.55405451IPR003441NAC domain
SuperFamilySSF1019412.09E-58469638IPR003441NAC domain
PROSITE profilePS5100554.111472638IPR003441NAC domain
PfamPF023658.8E-25473611IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK  120
GKPPKGVKTD WIMHEYRLTG TSANSTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD  180
QHDQEPEEST VEQLEDIHDN NSSEQPPAPA DMNNQQSDFQ PMTAMSMSKS CSLTDLLNTI  240
DCAALSQFLL DGSSDAIAEP PAPPSPLIYT TPHPNYQTLN YNINSNSSMP HAFESRLDHH  300
DGYVNNYNVN GLRRKRMMAC SATSFDDGSS SNDFVHAVVK KPQLLPSDSR GSGFGGGYCN  360
QQLSETATGF QFQNGNLLSH PFPLNNHLQM HMVEPVKSEL GSLFLPPGFR FHPTDAEVIL  420
NYLLEKFINP SFTSLPIHEV DLNKCEPWDL PTSMVETSTS LVKLEQDGSL FLPPGFRFHP  480
TDAEVILSYL LQKFLNPSFT SLPIGEVDLN KCEPWDLPSK AKMGEKEWYF FSHKDMKYPT  540
GMRTNRATKE GYWKATGKDR EIFNLQPTSY GGSSNNKNNK QLVGMKKTLV FYMGRAPKGT  600
KTNWVMHEFR LHANLHNDNP NLRLNPKDEW VVCKVFHKKG DDREAINKQQ AQAAAVDQYS  660
AGTPNNGSSV EAGDDDDDLF QLDSIIDPSI YFSNSSAANI LSAPPNMSNS VVAANYGAST  720
TTTGTASAGS FQQQPNYCSL INKSISSSNV SSWNNMPPPP PVAEGGVHGI GSSYSLQHQA  780
AMVKALRDVI RLPNPLGMPQ YKLDDAYLWD SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-69116418172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in responses to drought stress and salt stress. Transactivates the stress response genes LEA19 and PM19L. {ECO:0000269|PubMed:19135985}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:19135985). Induced by drought stress (PubMed:19135985). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:19135985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679220.0AK067922.1 Oryza sativa Japonica Group cDNA clone:J013121J10, full insert sequence.
GenBankCT8295090.0CT829509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615093.10.0NAC transcription factor 29
SwissprotQ2RB330.0NAC45_ORYSJ; NAC domain-containing protein 45
TrEMBLA0A0E0R3L80.0A0A0E0R3L8_ORYRU; Uncharacterized protein
STRINGORUFI11G01500.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-77NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zheng X,Chen B,Lu G,Han B
    Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
    Biochem. Biophys. Res. Commun., 2009. 379(4): p. 985-9
    [PMID:19135985]