PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G01050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 673aa    MW: 74047.3 Da    PI: 7.1718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G01050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.88.1e-22131191359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  ORUFI11G01050.1 131 DGYQWRKYGQKQIEGALYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 191
                      9************************9888889**********98776537899*****997 PP
2WRKY55.31.3e-17428482356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  ORUFI11G01050.1 428 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 482
                      9**************************99999********987.43332.2344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-23114192IPR003657WRKY domain
SuperFamilySSF1182909.02E-21122191IPR003657WRKY domain
SMARTSM007746.5E-31129192IPR003657WRKY domain
PROSITE profilePS5081119.405131172IPR003657WRKY domain
PfamPF031068.2E-22131191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-20421496IPR003657WRKY domain
SuperFamilySSF1182901.44E-18422496IPR003657WRKY domain
SMARTSM007741.6E-29426498IPR003657WRKY domain
PROSITE profilePS5081114.584428468IPR003657WRKY domain
PfamPF031065.6E-22428496IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TPTTPASHST TALAGDGECC LPPGLTTTTT  60
VSGGGRRRGR KRVNRDNDNV KLLLQADDDQ EAVIADHGDA NAKPLPNFTK TRRRKQQATT  120
STMVTTVPDF DGYQWRKYGQ KQIEGALYPR SYYRCTNSTN QGCLAKKTVQ RNGGGGAAGY  180
TVAYISEHTC KSIEPSLPPV ILDTTVRTTN NHQQPAAAES PAATSSSSSN MVMTSSETGN  240
WSGQHGAYAC RQMIAADEEY CCWDTPATTT TTSGSNGGNK EIMKNSSNKR SLVADQWHPS  300
SVCCDHRAAL REIAKGQSLV TQLRAIVLPA LHSDERCDLA AQMLEGILDC SRKAVSQLQL  360
LLSSPHDDDD HHHVDDKRRV RKIISSSDDD DHCSSKAAED HNAKPLRQHK RRRFGDSVSL  420
ETPVPHYDGH QWRKYGQKHI NNSKHPRSYY RCTYRQEEKC KATKTVQQRE DLHHANSYNG  480
DHPIMYTVVY YGQHTCCKGP AALADDHVVV EASQISTDSH CQSPSSSSDL QAAEVHAGNS  540
SQCSNISVTC SSSVVVEDCN KLLDMMPAAD ELTADVLGPD PQPPQNTQVQ LWLKHLTMMD  600
INGGSMVRNG SLEQNIPGIH PQNRSCRLSW VGEKANCGRW VEGFGAERVD AGWVPRSVAG  660
KTYGEERAVE GER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-131314961069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115TRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891750.0AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616436.10.0probable WRKY transcription factor 54
TrEMBLA0A0E0R3F80.0A0A0E0R3F8_ORYRU; Uncharacterized protein
STRINGORUFI11G01050.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-16WRKY DNA-binding protein 70