PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G20730.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 879aa    MW: 94193.6 Da    PI: 5.7234
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G20730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20132187156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  ORUFI10G20730.1 132 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 187
                      688999***********************************************998 PP
2START129.92.9e-413475782206
                      HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
            START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeqW 72 
                      la +aa++l ++  a+ep+Wv+ +       e           e ++                  + e  r+ +vv+m++ +lv  +ld + +W
  ORUFI10G20730.1 347 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-KW 428
                      678999******************66554333...........3333344444445567778888888888999*****************.** PP

                      -TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSE CS
            START  73 detla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpS 150
                       e ++    ka t++ i+ g        g+l lm+ae q+lsplv+ R++vf Ry+     +g+w+ivd   +  ++     ++svvR++++pS
  ORUFI10G20730.1 429 MELFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRRPS 520
                      **********************************************************9999*******55555555..356************ PP

                      EEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 151 giliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                      g++i++++ng+s+v+wveh+++ g     + ++r  v sg+a+ga +w++ lqrqce+
  ORUFI10G20730.1 521 GCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 578
                      *********************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-19116190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-22119183IPR009057Homeodomain-like
PROSITE profilePS5007117.167129189IPR001356Homeobox domain
SMARTSM003893.4E-19130193IPR001356Homeobox domain
PfamPF000463.7E-18132187IPR001356Homeobox domain
CDDcd000866.95E-19132190No hitNo description
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084844.182337581IPR002913START domain
SuperFamilySSF559611.65E-28340580No hitNo description
CDDcd088757.79E-101341577No hitNo description
SMARTSM002349.3E-23346578IPR002913START domain
PfamPF018522.0E-33347578IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-4460544IPR023393START-like domain
SuperFamilySSF559611.92E-15603775No hitNo description
SuperFamilySSF559611.92E-15821860No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAGAASS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAAATLIPK  60
EEGLMGGLHV AKDEGMDLEM DMELSGGSGS AHLDGLLSFA DVDDDHKPQH SGHDQPPDAA  120
QPSGAAGGNA KKKRYHRHTA HQIQQMEALF KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ  180
NRRTQMKAQQ DRADNVILRA ENENLKSDNF RLQAAIRNVV CPNCGHAAVL ADMSYEEQQL  240
RIENARLKDE LDRLACIATR YGGGGGRQPV LSTSALSCIS APPPVLMPPL DLDMNVYSRH  300
FAEQAPVMGC GDLIPPPVVP QHDGAAAYMG AMMAPVQEQD KQLVVDLAAT AADQLARMCR  360
AGEPLWVRQR GAEVMAVEEH ARMFSWPVDG AKQGDGGAVA RAEGTRDNAV VIMNSINLVD  420
AFLDANKWME LFPSIVCKAR TIQIINHGAA SGHLGSGTLL LMQAEVQFLS PLVAAREVVF  480
FRYCVHNADE GSWAIVDFPA EGFEEGLLQA SVVRCRRRPS GCIIQDMPNG YSRVVWVEHM  540
EMVGEEKPLQ PVFRDYVASG AAFGATRWLS ILQRQCERLA SELARNIADL GVIRTPEART  600
NMMKLSQRMI TTFCANISAS GTQSWTALSD STQDTIRVTT RKNTEPGQPS GVILTAVSTS  660
WLPFTHQQVF ELLADEQQRC QLEILSNGGS LHEVAHIANG SHPRNCISLL RINAASNSSQ  720
NVELLLQESS THPDGGSLVV FATVDVDAIQ VTMSGEDPSY IPLLPLGFAI FPATSPSPAA  780
APTISSSTTT TTGNGNGETS STPPRNSSSN NNNADELLPP NGCLLTVGMQ VLASAVPSAK  840
LNLSSVTAIN SHVCNAIHQI TAALKGSAGG AGGEPASDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0E0R2V40.0A0A0E0R2V4_ORYRU; Uncharacterized protein
STRINGORUFI10G20730.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]