PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G17310.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 193aa    MW: 20462 Da    PI: 6.8039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G17310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-183483155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g
  ORUFI10G17310.1 34 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRG 83
                     68*****96..5*********66.....68*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-123483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-253592IPR001471AP2/ERF domain
PROSITE profilePS5103218.8613591IPR001471AP2/ERF domain
SMARTSM003806.2E-243597IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-183592IPR016177DNA-binding domain
CDDcd000181.85E-133693No hitNo description
PRINTSPR003671.2E-63647IPR001471AP2/ERF domain
PRINTSPR003671.2E-67393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEQRAAAAAQ QRQGRRQSAA ACGIRRARAE TRHPVYRGVR FRAGKWVSEI RELRKPSRIW  60
LGTYATPEMA AAAYDAAALA LRGRGAALNF PDAARSRPAP ASASADDVRA AATAAAAAMA  120
HQEEDDDSRR QLEDGGGGGG VVDEDDVLEM PRLMVSMAEG LMINPPPVML GLQADGGGIM  180
DEGGGVVRLW DHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1233911272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788940.0AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613984.11e-133ethylene-responsive transcription factor ERF027
SwissprotQ9SJR05e-38ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0E0R1K81e-132A0A0E0R1K8_ORYRU; Uncharacterized protein
STRINGORUFI10G17310.11e-133(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-15ERF family protein