PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI10G10360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 543aa MW: 56422.7 Da PI: 7.7747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.3 | 9.9e-26 | 19 | 154 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdk 90 lp Gf F Ptd+el+ L++k g++ +++++ +++++i++++P +L k +k eek + yfFskr+ ++++kr+ r+++ g W+++g ORUFI10G10360.1 19 LPIGFYFAPTDQELL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKGYfYFFSKREFPTSSKKRPLRVAEGGAWNSSGAVY 111 699************.7799999999954445556**************83444445554458999999999999*****************99 PP NAM 91 evlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127 +v+++ +g +vg kktLvf++ +++++kt+W ++e++ ORUFI10G10360.1 112 KVVKSsksgGGYDVGHKKTLVFHQRfpGDKEAVKTNWAIQEFT 154 9999766666666**********7544667789********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-32 | 12 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.425 | 19 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-13 | 20 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAAPEDGEDK NFGKNKHGLP IGFYFAPTDQ ELLAILEAKR LGRPLSRAHD AFFHDIRILD 60 FHPAELYEKY AKDEEKGYFY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG 120 GGYDVGHKKT LVFHQRFPGD KEAVKTNWAI QEFTRIIGPQ NEVPDLAVYR LYKMRKEGRE 180 TPADLAADEA AAAAAMNNRG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYGP 240 SKSSSSQLQQ DAAAAAAPPN AAGASNWAPR PCNCRECAPA AGHYGYFAAA AAMNNRGGQA 300 SAAAKALPLP APGLPGVRRM SMADKANMAS TSKAYGPSKS SSSQLQQGAA AVAAPPNAAG 360 PSNWAPRPCN CRECAPAAGQ YGYFASMVPR PSLDRKGKGK APMDCAEQAG GGGGCHAEST 420 STPAPPKGAE YYGCSVAVED DDEELLKFLQ AMVRGEEVEG DGDHAMADER GPQQGSSPVA 480 AAAASGSAPA GHDGRRGSLQ GGHHGSSSPT SLAAAAATGD DVTSAASAGD DVSGSQQEDH 540 PAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242158 | 0.0 | AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614025.1 | 0.0 | spidroin-2 | ||||
TrEMBL | A0A0E0QZ31 | 0.0 | A0A0E0QZ31_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G10360.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22021 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 5e-13 | NAC family protein |