PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G09580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 296aa    MW: 32599.6 Da    PI: 10.1598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G09580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.91.9e-27481841127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvka.eekewyfFskr..dkkyatgkrknratksgyWkatgkd 89 
                      +p+Gf F P+d el    ++k v+g+  ++ +  +++++i++++P  L+ + +++ e++ +yfFs+r  + k+++++r+ r+++ g+Wka+g +
  ORUFI10G09580.1  48 MPVGFYFVPKDLELFAILMCKLVRGEVPSALNNvFEHIRILEFHPALLReTYIENmEDRCIYFFSRRlfAAKARNKRRPMRVANGGTWKASGGS 141
                      699*********************99966655449999**********84455552444569999984446666899***************** PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy    + ++++ kt+W mhey+
  ORUFI10G09580.1 142 KTVRSKkvGGIDVGQKLTMVFYerrFEGDQNPIKTNWAMHEYT 184
                      ****99888899**********43313456678*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-3542208IPR003441NAC domain
PROSITE profilePS5100533.148205IPR003441NAC domain
PfamPF023651.9E-1449184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSAWLPQLEI AAEQPPEGGG DGGGNNNGKW KGKEKVVVPE YGKNRHGMPV GFYFVPKDLE  60
LFAILMCKLV RGEVPSALNN VFEHIRILEF HPALLRETYI ENMEDRCIYF FSRRLFAAKA  120
RNKRRPMRVA NGGTWKASGG SKTVRSKKVG GIDVGQKLTM VFYERRFEGD QNPIKTNWAM  180
HEYTKIIPGS KNQLEDLAVY RLYKIRRKED TEPVNAAAAA SSTDKPSTPE ALPPPTPPPR  240
PLLNMAGSSS ATSLLPPQLP GLAGSSSTMP LALPLQLPGL PGSSAAMSLC RAWLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-144820417164NO APICAL MERISTEM PROTEIN
1ut4_B2e-144820417164NO APICAL MERISTEM PROTEIN
1ut7_A2e-144820417164NO APICAL MERISTEM PROTEIN
1ut7_B2e-144820417164NO APICAL MERISTEM PROTEIN
4dul_A2e-144820417164NAC domain-containing protein 19
4dul_B2e-144820417164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839431e-175AC083943.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence.
GenBankAP0149661e-175AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-175CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.11e-130NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0QYT10.0A0A0E0QYT1_ORYRU; Uncharacterized protein
STRINGORUFI10G09580.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-16NAC domain containing protein 3