PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G09270.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 743aa    MW: 79884.3 Da    PI: 4.8546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G09270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.7e-111971112
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +p+Gf F P+d el+   ++k v+gk   + ++v+k+++i+++  P++++    +       F+++++   +++r+ r+++ g+Wka+g +k+v
  ORUFI10G09270.1   1 MPVGFYFVPKDLELLAILMCKLVRGKVPGAlNNVFKHIRILNStPPSSMR----Q-------FATKAR---NKRRPMRVADGGTWKASGGSKKV 80 
                      699**********************9965514569999877661556664....2.......555555...5679******************9 PP

              NAM  93 lskkgelvglkktLvfykgr 112
                          g +v  k t+vfy+ r
  ORUFI10G09270.1  81 G---GIDVSQKFTMVFYERR 97 
                      5...599**********654 PP
2NAM80.53.6e-254015362127
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 
                       +G  F P+d el     +k v+g+    l++v+++++i++++P  L+ + +++ee+  +yfFskr+ +++  +++r++r+tk+g+Wka+g +k
  ORUFI10G09270.1 401 SVGWYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEFHPALLHeTYIRNEEDgYIYFFSKRQFTTKagNKRRPTRVTKDGTWKASGGSK 494
                      689***********7766666666653334566999***********8456666555356****9986555337889***************** PP

              NAM  91 evlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      +v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  ORUFI10G09270.1 495 TVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 536
                      ***99888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-131115IPR003441NAC domain
PROSITE profilePS5100513.9251137IPR003441NAC domain
PfamPF023659.1E-5296IPR003441NAC domain
SuperFamilySSF1019411.83E-33394560IPR003441NAC domain
PROSITE profilePS5100530.399400557IPR003441NAC domain
PfamPF023655.5E-13402536IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MPVGFYFVPK DLELLAILMC KLVRGKVPGA LNNVFKHIRI LNSTPPSSMR QFATKARNKR  60
RPMRVADGGT WKASGGSKKV GGIDVSQKFT MVFYERRFEG DRNPLEDLAV YRVYKIRRKE  120
DTEPVNAAAA VSSTDEPSTP AALPLTTPPP RPLPDMAGSS SATSLLPLQL PGLAGSSSTM  180
PLALPLQLPG LPRSSSVMSL PGLAGEMTSM GHGETGEHGL DVTGINTVVG APTRLELTDG  240
TDGDGAMADG DTQLDAAAAA AEFDSERVAE IVSQIMDGEF EFKFDDDTIV SFNEVVAAPM  300
LIDGDGDGDG DGADGAATAV VSILEGTAGG VSYGGVCQRL PVSNFFGAGV SELRARRDGG  360
EGEGGAEQPP EGRGGGGNNN GKWKGKEKVV PEYGKNRHGM SVGWYFVPKD LELFAILRCK  420
LVRGQLPGAL NNVFEHIRIL EFHPALLHET YIRNEEDGYI YFFSKRQFTT KAGNKRRPTR  480
VTKDGTWKAS GGSKTVRSKK VGGIDVGQKL TMVFYERRFE GDRNPIKTNW GMHEFTKIID  540
GTKNQLEDLA VYRLYKIKRK EDEEPSNTAA AASSTDEPAT SSALPPPTPP RPLPDMAGPS  600
SPAPPPAVDH HHRLSPPHDA AGSNYNHPEL ADYNGGVQAQ HEHQYHPQEP QASLVDAEDG  660
YSAMAGGDDA QLGGAELDTE RIAEMVNHIM DGEFEFKFED NTVLKYNEVF PDNDEVVAAP  720
MMIDGGRDGD GADGGDGDDP FDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923880.0AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221440.0AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.11e-136NAC transcription factor NAM-B2
TrEMBLA0A0E0QYP10.0A0A0E0QYP1_ORYRU; Uncharacterized protein
STRINGORUFI10G09270.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.17e-13NAC family protein