PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI10G09060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 33602.8 Da PI: 5.5711 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +g+W+AeIrdp+ r r++lg+f tae Aa+a++aa+++l+g+ ORUFI10G09060.1 112 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 162 69*******.**********63....56**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.1E-21 | 112 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-31 | 112 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-35 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 112 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-13 | 112 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.36E-16 | 112 | 146 | No hit | No description |
PRINTS | PR00367 | 9.1E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSQTQSNSNQ THLPTPNPSR ARAMCGGAIL ADLIPSPRSG GHTKKNKRRR ISDDEDFEAA 60 FEEFDAGDDD SESEEVDEYD VIVDDDDSED GVVVLPPPPP PVIPHERHGA RRFRGVRKRP 120 WGKWAAEIRD PVRGVRVWLG TFPTAESAAR AYDAAARRLR GAKAKPNFPS APPPSAAAHR 180 RKKRRAHAAT RSPSSPPATS EVTAASASAS SDVPAPAFAS FVGEPGHGGA KSMPTTSHTS 240 QPAPPATVAS ENVDDPEVFD PYDVHGGLAS YFAGGAYESL ESLFAHGGDS AAVDQAASDH 300 WPAALWSFAD DGSFCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 113 | 169 | 6 | 63 | ATERF1 |
3gcc_A | 4e-19 | 113 | 169 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 50 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110269 | 0.0 | AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613362.2 | 1e-168 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0QYL2 | 0.0 | A0A0E0QYL2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G09060.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15195 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-15 | ERF family protein |