PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI10G06270.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 286aa MW: 31996 Da PI: 8.3021

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G06270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	42	1.9e-13	63	134	2	59
--SS-EEEEEEE--TT-SS-EE..........EEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprs..........YYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 Dg+ WrKYG K++k+s fpr YYrC+++ +C+++k v++++ d+ + +tY H+++ ORUFI10G06270.1 63 TDGHLWRKYGEKKIKNSSFPRRwcktvaiyrlYYRCSYRddrNCMATKVVQQENdADQPLYRVTYIHPHTCN 134 7*****************854555555555**99999***98761588899******997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	9.29E-16	58	135	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-18	61	134	IPR003657	WRKY domain
SMART	SM00774	5.6E-28	62	135	IPR003657	WRKY domain
PROSITE profile	PS50811	10.349	63	136	IPR003657	WRKY domain
Pfam	PF03106	4.3E-16	64	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MASRHQLQTM QFTDPASRSP RPVGGGVHGQ PPPTPMSSPF SSRKPRMQEG HPTCVNLTPI 60 PHTDGHLWRK YGEKKIKNSS FPRRWCKTVA IYRLYYRCSY RDDRNCMATK VVQQENDADQ 120 PLYRVTYIHP HTCNPSPPAP TPAHVFTEPP PAKAEVHHAV LFRFSSTAGG HTANNAVHRQ 180 QWQPAAATMA AGAQAQLSMT MSDDEREQPP AAIRSAPPAR RLSMFRAVVD GLRQMRSSAP 240 PTPSSSMVVD DGWDTFSSFD LDTCEFSVDD ELFCGDHMYF PDSMQQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099774	0.0	AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613415.2	0.0	probable WRKY transcription factor 32
TrEMBL	A0A0E0QXL2	0.0	A0A0E0QXL2_ORYRU; Uncharacterized protein
STRING	ORUFI10G06270.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16993	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80590.1	1e-14	WRKY DNA-binding protein 66