PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G80590.1 | ||||||||
Common Name | ATWRKY66, T21F11.8, WRKY66 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 26402.8 Da PI: 6.1523 | ||||||||
Description | WRKY DNA-binding protein 66 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.8 | 1.4e-20 | 86 | 145 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k s++ r YYrC++a +C ++k+v++ +++p v tY g+H +e AT1G80590.1 86 DGFIWRKYGQKTIKTSPHQRWYYRCAYAkdqNCDATKRVQKIQDNPPVYRNTYVGQHACE 145 9**************************98999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.128 | 79 | 147 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-22 | 82 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-22 | 83 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-31 | 84 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-22 | 86 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSLEIDAKAV SALLLGQGCA NNLKTLLKNH ETGSVSTEPL INSILDSFSF ALSSQNIPRH 60 VSQRSSKKKM CGIQGMEDSP TPAHIDGFIW RKYGQKTIKT SPHQRWYYRC AYAKDQNCDA 120 TKRVQKIQDN PPVYRNTYVG QHACEAPAYA VNNGGTYGSK MIKFDYVIPE SVMPQPLSID 180 SQEITMEDKD TDDHILNYIN EHLMEDEAYD VFPDVLGERC CFGLEPFPGL NINKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-15 | 86 | 145 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18412873 | 0.0 | ||||
Genevisible | 260278_at | 0.0 | ||||
Expression Atlas | AT1G80590 | - | ||||
AtGenExpress | AT1G80590 | - | ||||
ATTED-II | AT1G80590 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group III | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G80590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G80590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493541 | 0.0 | AB493541.1 Arabidopsis thaliana At1g80590 mRNA for hypothetical protein, partial cds, clone: RAAt1g80590. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178174.1 | 1e-179 | WRKY DNA-binding protein 66 | ||||
Swissprot | Q9M8M6 | 1e-180 | WRK66_ARATH; Probable WRKY transcription factor 66 | ||||
TrEMBL | A0A178W5N0 | 1e-173 | A0A178W5N0_ARATH; WRKY66 | ||||
STRING | AT1G80590.1 | 1e-179 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5609 | 18 | 47 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
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Phytozome | AT1G80590.1 |
Entrez Gene | 844398 |
iHOP | AT1G80590 |
wikigenes | AT1G80590 |