PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G18880.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 306aa MW: 33146.1 Da PI: 5.577

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G18880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9.2e-08	53	82	19	48
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 G +W+++++ g+ R++k+c++rw +yl ORUFI09G18880.1 53 NGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 82 57779*******99**********97 PP
2	Myb_DNA-binding	53.1	7.5e-17	91	132	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T E++l +d++++lG++ W++Ia++++ gRt++++k++w+++ ORUFI09G18880.1 91 LTDAEEQLVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 132 5899*************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	9.3	34	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-12	46	88	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.11	46	82	IPR017877	Myb-like domain
Pfam	PF00249	3.0E-6	52	82	IPR001005	SANT/Myb domain
CDD	cd00167	0.00894	54	82	No hit	No description
SuperFamily	SSF46689	3.81E-21	69	141	IPR009057	Homeodomain-like
PROSITE profile	PS51294	28.032	83	137	IPR017930	Myb domain
SMART	SM00717	2.2E-15	87	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-25	89	138	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-15	91	132	IPR001005	SANT/Myb domain
CDD	cd00167	7.52E-13	92	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MHPWGTEVAK PSATPDCSFC VVEESVDRGT VSRPGGVHAA LQVVVLMSFI LTNGHCCWRA 60 VPKLAGLLRC GKSCRLRWTN YLRPDLKRGL LTDAEEQLVI DLHAKLGNRW SKIAAKLPGR 120 TDNEIKNHWN THIKKKLIKM GIDPVTHEPL DRKQESPATT SQSTVTAESS KSGEATRQQS 180 RQLDDAVVRD MSVSAGGDSP PESSTNTAST AGGSSSSSSS HHQDPLVKWL LEEDLLPTGD 240 EPWLNFTASN DVDEFSSIAA TGATPALPWD VGMTTDWLLD YQDFGMGDSS LVVDASMVNS 300 SNGSNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-20	46	137	18	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311052	0.0	AJ311052.1 Oryza sativa mRNA for Myb13 protein (myb13 gene).
GenBank	AJ311053	0.0	AJ311053.1 Oryza sativa mRNA for Myb15 protein (myb15 gene).
GenBank	AK111740	0.0	AK111740.1 Oryza sativa Japonica Group cDNA clone:J023047I22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612200.1	0.0	protein ODORANT1
Refseq	XP_015612203.1	0.0	protein ODORANT1
Refseq	XP_015612204.1	0.0	protein ODORANT1
Refseq	XP_015612205.1	0.0	protein ODORANT1
Refseq	XP_015612206.1	0.0	protein ODORANT1
Refseq	XP_015612207.1	0.0	protein ODORANT1
Refseq	XP_015612208.1	0.0	protein ODORANT1
Refseq	XP_015612209.1	0.0	protein ODORANT1
Swissprot	Q50EX6	2e-73	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A0E0QUA2	0.0	A0A0E0QUA2_ORYRU; Uncharacterized protein
STRING	ORUFI09G18880.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	4e-68	myb domain protein 42

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]