PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G14410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 356aa    MW: 37445.3 Da    PI: 6.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G14410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.4e-14137188155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  ORUFI09G14410.1 137 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 188
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.96E-14135192No hitNo description
SuperFamilySSF474592.49E-17136205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGGN WDAAACSSML  60
LHGFQELEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGG HQEDQAAVAA AATAVQSGRR  120
KRRRARAAKN KEEVESQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYAQR GDQASIVGGA  180
INFVKELEQL LQSLEARKSS RQCAAHDAAA AAAPFASFFT FPQYSMSAAA AAAPVAPVVN  240
ELHGRDDGGA GTAEAEASGS KPSAVADVEV TMVESHANLR VLSRRRPRQL LRLVVALQGH  300
RLTVLHLNMT SAGHMVLYSI SLKVEDDCQL TSVDEIATAA HQIIEKIQEE QGCSLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053990.0AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055740.0AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.10.0transcription factor bHLH94
RefseqXP_015612233.10.0transcription factor bHLH94
SwissprotQ9C7T41e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0QSK90.0A0A0E0QSK9_ORYRU; Uncharacterized protein
STRINGORUFI09G14410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.17e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]