PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G11120.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 532aa MW: 52525.9 Da PI: 7.6139

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G11120.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	289	337	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq ORUFI09G11120.1 289 HSIAERLRRERIAERMKALQELVPNA--NKLMQTDKASMLDEIIDYVKFLQ 337 99*********************7..48888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.08E-12	282	341	No hit	No description
SuperFamily	SSF47459	1.06E-15	282	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.787	284	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.6E-15	288	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-9	289	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-13	290	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD LAAGKAAEDD 60 AEGMHHHHHH QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ MVLQQLADLR 120 QGHHMMLQGL GGRSPAGGGG GGGDGGLLLP LTLGSGGSGG DVQALLKAAA ANSAGGGDAG 180 GVYGGGFAGS LHQQQQHFQP HPQVLINSLA DISHGSPRLK TLKHRPCVCL QTAPTIPTQS 240 FGGGGGGGGG GTASGGGAAQ PQAGAAGGGA PAPPRQRVRA RRGQATDPHS IAERLRRERI 300 AERMKALQEL VPNANKLMQT DKASMLDEII DYVKFLQLQV KASTYTKLLI HVLSMSRLGG 360 AAAVAPLVAD MSSEGRGGGA ANGGAPAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL 420 QGKGLCLMPI SLASAISSAT CHLRPPVVAA AQQFPAGLGA AAAAAHHHQL SAAAAAAAAM 480 RGHLPGLNAD GSVPASPSMS VLTAQSAMAN GGGGAADGEG SQLKDAASVS KP

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD LAAGKAAEDD  60
AEGMHHHHHH QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ MVLQQLADLR  120
QGHHMMLQGL GGRSPAGGGG GGGDGGLLLP LTLGSGGSGG DVQALLKAAA ANSAGGGDAG  180
GVYGGGFAGS LHQQQQHFQP HPQVLINSLA DISHGSPRLK TLKHRPCVCL QTAPTIPTQS  240
FGGGGGGGGG GTASGGGAAQ PQAGAAGGGA PAPPRQRVRA RRGQATDPHS IAERLRRERI  300
AERMKALQEL VPNANKLMQT DKASMLDEII DYVKFLQLQV KASTYTKLLI HVLSMSRLGG  360
AAAVAPLVAD MSSEGRGGGA ANGGAPAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL  420
QGKGLCLMPI SLASAISSAT CHLRPPVVAA AQQFPAGLGA AAAAAHHHQL SAAAAAAAAM  480
RGHLPGLNAD GSVPASPSMS VLTAQSAMAN GGGGAADGEG SQLKDAASVS KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	GGRSPAGGG
2	293	298	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005784	0.0	AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610784.1	1e-176	transcription factor UNE12 isoform X1
Swissprot	Q9ZUG9	2e-72	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0QRG3	0.0	A0A0E0QRG3_ORYRU; Uncharacterized protein
STRING	ORUFI09G11120.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-42	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]