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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ORUFI09G04060.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 306aa MW: 34692.4 Da PI: 8.298 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORUFI09G04060.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00024 | 155 | 174 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
+ Cp C k+Fsr nL+ H+
ORUFI09G04060.1 155 FACPVCCKTFSRYNNLQMHM 174
78*****************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MANPSKDHIF PNQRSLISQS SSPHNSLPKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV 60
MEDVDISLQI GLPSPDPNSS VIDFAKSNPL GATATTSQEL DGDDDDDHKV EVEREEEEEA 120
ASDDLCLDYF SMGKLTKGKY WIPTPTQILI GPTHFACPVC CKTFSRYNNL QMHMWGHGSQ 180
YRRGPESLRG TQPAAMLRLP CFCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHCAKPFA 240
CRKCGKPLAV RGDWRTHEKN CGRRWHCACG SDFKHKRSLK DHIRAFGRGH RERPPPPPPH 300
PLLPLP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC090054 | 0.0 | AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence. |
| GenBank | AP006527 | 0.0 | AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10. |
| GenBank | AP006727 | 0.0 | AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
