PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G26260.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 439aa    MW: 47779.2 Da    PI: 8.5918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G26260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.8e-07258280123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  ORUFI08G26260.1 258 HYCQVCGKGFKRDANLRMHMRAH 280
                      68*******************99 PP
2zf-C2H2120.00063350373123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k+Fs  s+L++H + +
  ORUFI08G26260.1 350 YVCNRCGrKHFSVLSDLRTHEKHC 373
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-6256283No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6258285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653258285IPR007087Zinc finger, C2H2
SMARTSM003550.0034258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SMARTSM00355140312345IPR015880Zinc finger, C2H2-like
SMARTSM0035536350376IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MASAERRIRM WWRTAGRPKH LWGRRSMLYM GHSRIYMDHY YDPIELHGQP PPLLMIPGGG  60
GGGGGGGISP YLVQSQHGHG GGVDGMEMEE GGGFMGEQPQ CHPLLYNLSV LKDRVQQLHP  120
LVGLAVAHNA HAHGPLDVSA ADAIIQEIVA AASSMMYAFQ LLCDLGTAPT TAPSQETAAA  180
SAVVVKNNDH AADAGQMEDD HLMQQQWQQN GSRQHDYSSH AHAPPVFHSE TAAPAGATSA  240
TDTIIELDAA ELLAKYTHYC QVCGKGFKRD ANLRMHMRAH GDEYKSKAAL SNPTKLLAKG  300
GDETMAAAAR KYSCPQEGCR WNRRHAKFQP LKSVICAKNH YKRSHCPKMY VCNRCGRKHF  360
SVLSDLRTHE KHCGDHRWLC SCGTSFSRKD KLIGHVSLFA GHQPVMPLDA PRAGKRQRSS  420
SASVAGNIDD TTGIGMGAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0E0QMF70.0A0A0E0QMF7_ORYRU; Uncharacterized protein
STRINGORUFI08G26260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein