PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G26250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 665aa MW: 72981.8 Da PI: 4.3324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4.1e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv++yLk+kv+g++l++ ++i+evd+ykvePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ev ORUFI08G26250.1 21 LAPGFRFHPTDEELVSYYLKRKVHGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 113 579***************************.99***************4357888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kktLvf+ grapkge+t+Wvmheyrl ORUFI08G26250.1 114 RN-GPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 148 *9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-60 | 14 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.612 | 21 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-29 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MSHPSSSSSS APPAAAEATS LAPGFRFHPT DEELVSYYLK RKVHGRPLKV DAIAEVDLYK 60 VEPWDLPARS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRNGPTTV 120 GMKKTLVFHA GRAPKGERTN WVMHEYRLDG QTTIPPQDSF VVCRIFQKAG PGPQNGAQYG 180 APFVEEEWEE DDEDVGLLPV EEKDNSDDQE KEISGAMEKG YLQMSDLVQN LVDQNENGTI 240 ALPVSDNSNN SNHSEDVDGN SGDILSDQNL GSNFLHHVEP VEQNGLVLNE NMFSSANAGD 300 LFNISSPNDG FLELKDFADI ADLENPLANE STIWPSDGWP WKSTDSMEAV NGASNEFSPL 360 AGEQIFQPEE LEQLLQSLQE DSHMGSTISD PPHSSITNLA KPEEDCLMFY DAPFDSSMCD 420 DGFRQLNGFL GSPSTNLSGI DMVDDGMPYY DAMDDNLFND LLSSVQPSAG SSSHAFSGPV 480 LTQEVNNSTY TYSPTQKVLE PNFVVGAPSS ARLPEADSQT KSSLIGKRFV KILDSISAPP 540 AFAAAEFPAS LRKSLAPISG AHHNTIRVSA EVISIGSLTP DSQDKWSLEK DEGMELLFSA 600 GFEPDTRVHF GCNTITAVLR GGFCLFFFSA IMLLVSYEVG MCIYGNKMGN ASFLGEQFSF 660 TLKEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 16 | 168 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069733 | 0.0 | AK069733.1 Oryza sativa Japonica Group cDNA clone:J023030H12, full insert sequence. | |||
GenBank | AK099629 | 0.0 | AK099629.1 Oryza sativa Japonica Group cDNA clone:J013057D07, full insert sequence. | |||
GenBank | AK120773 | 0.0 | AK120773.1 Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence. | |||
GenBank | KF280262 | 0.0 | KF280262.1 Oryza sativa Japonica Group NAC transcription factor (NAC40) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649510.1 | 0.0 | uncharacterized protein LOC4346333 | ||||
TrEMBL | A0A0E0QMF5 | 0.0 | A0A0E0QMF5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G26250.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7107 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 2e-72 | NAC domain containing protein 53 |