PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI08G24230.1 | ||||||||
Common Name | NAC4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 24699.2 Da PI: 10.4104 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.1 | 2.6e-30 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkev 92 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r + a+g+r++ +++ g Wk a g+dk+v ORUFI08G24230.1 19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPAA-ARGRRQQVTASGGCWKpAGGRDKPV 108 79****************************.8899998***********43..456789****99886.578999999999****66678***9 PP NAM 93 lsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 +++ +++lvg+kk +vf + a + Wvmhey+l ORUFI08G24230.1 109 VVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155 9988988999**********8854433222333333667******97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-40 | 14 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.554 | 19 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-20 | 20 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGDKYFFAVR PAAARGRRQQ VTASGGCWKP AGGRDKPVVV ARCGGSHLVG 120 VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLARPMH KKGCLAEAEE WVVCRIFQRS 180 SSGSRSPRRP DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-29 | 19 | 185 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT841566 | 0.0 | CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence. | |||
GenBank | KJ690249 | 0.0 | KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-165 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A096ZZ88 | 1e-166 | A0A096ZZ88_ORYRU; NAC transcription factor 4 | ||||
STRING | ORUFI08G24230.1 | 1e-167 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-31 | NAC domain containing protein 83 |