PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G22260.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 402aa    MW: 41803.5 Da    PI: 8.233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G22260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13333378655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  ORUFI08G22260.1 333 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 378
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16330387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-12331382No hitNo description
Gene3DG3DSA:4.10.280.103.1E-15332389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPAMS SSGLLRYRSA PSTLLAEFCD DFLPPAAAPR AASPDADNVF  60
SRFLADHQIR DKSPPATAAA AAAAAHFPDD PTMATQHHHQ QQMMFQHHPQ QMASVEGLYR  120
TVSSTGIDAA TAAANAAGGG GGGLLRQSSS PAGFLNHLNM DNGYGSMLRA GMAAAGGGVG  180
FRNGANAAAA ADSPGGSGGR LKGQLSFSSR QGSLMSQISE MDSEELGGSS PEGAGGGGGG  240
GGRGYLSGYP MSSGWEESSL MSDTNISGVK RQRDSSEPSQ NGGGGGGGGG LAHQFSLPKT  300
SSEMAAIEKF LQFQDAVPCK IRAKRGCATH PRSIAERVRR TRISERIRKL QELVPNMDKQ  360
TNTADMLDLA VDYIKDLQKQ VKGLNDSRAN CTCSAKHQQY SG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001060.0AK100106.1 Oryza sativa Japonica Group cDNA clone:J023004M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650699.10.0transcription factor bHLH130
TrEMBLA0A0E0QKZ40.0A0A0E0QKZ4_ORYRU; Uncharacterized protein
STRINGORUFI08G22260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-49bHLH family protein