PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G21630.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 650aa    MW: 70574.3 Da    PI: 7.9398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G21630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31253308259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkk vers+ d++++ei+Y+g+Hnh+
  ORUFI08G21630.1 253 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKK-VERSQ-DGQITEIVYKGSHNHP 308
                      8*******************************998.****9.***************7 PP
2WRKY105.52.7e-33463521159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe
  ORUFI08G21630.1 463 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 521
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-27248310IPR003657WRKY domain
SuperFamilySSF1182904.45E-24250310IPR003657WRKY domain
SMARTSM007745.3E-35252309IPR003657WRKY domain
PfamPF031062.3E-23253308IPR003657WRKY domain
PROSITE profilePS5081120.53253310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37448523IPR003657WRKY domain
SuperFamilySSF1182904.32E-29455523IPR003657WRKY domain
PROSITE profilePS5081137.597458523IPR003657WRKY domain
SMARTSM007741.7E-38463522IPR003657WRKY domain
PfamPF031062.5E-25464521IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MSSFLNEEFS SGPFSDIFCD NGSNKHQDGL GKSKAFIDSS REETAQLAKK FESNLFGANQ  60
KSSSNGCLSE RMAARTGFGV LKIDTSRVGY STPIRSPVTI PPGVSPRELL ESPVFLPNAI  120
AQPSPTTGKL PFLMHSNVKP SIPKKTEDET RHDRVFFFQP ILGSKPPTCP VAEKGFSVNH  180
QNQPSVTDNH QELSLQSSST AAKDFTSATI VKPKTSDSML DNDDHPSPAN DQEENATNKN  240
EEYSSDLIIT PAEDGYNWRK YGQKQVKNSE HPRSYYKCTF TNCAVKKVER SQDGQITEIV  300
YKGSHNHPLP PSNRRPNVPF SHFNDLRDDH SEKFGSKSGQ ATATSWENAA NGHLQDVGSE  360
VLTKLSASLT TTEHAEKSVM DKQEAVDISS TLSNEEDDRV THRAPLSLGF DANDDDVEHK  420
RRKMDVYAAT STSTNAIDIG AVASRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN  480
PNPRSYYKCT HPGCSVRKHV ERSSHDLKSV ITTYEGKHNH EVPAARNSGH PSSGSAAAPQ  540
ATNGLLHRRP EPAQGGGGGS LAQFGYGSAG HRPAEQFGAA AAGFSFGMLP RSIATPAPSP  600
AIAVPAMQGY PGLVLPRGEM KVNLLPQSGN AGAAASQQLM GRLPKQHPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36253524878Probable WRKY transcription factor 4
2lex_A1e-36253524878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0655180.0AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence.
GenBankAY8706100.0AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds.
GenBankCT8288680.0CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence.
GenBankCT8288690.0CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence.
GenBankDQ2981800.0DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650158.10.0probable WRKY transcription factor 2
RefseqXP_015650159.10.0probable WRKY transcription factor 2
RefseqXP_015650160.10.0probable WRKY transcription factor 2
RefseqXP_015650162.10.0probable WRKY transcription factor 2
RefseqXP_015650163.10.0probable WRKY transcription factor 2
RefseqXP_015650164.10.0probable WRKY transcription factor 2
RefseqXP_015650165.10.0probable WRKY transcription factor 2
RefseqXP_025883130.10.0probable WRKY transcription factor 2
RefseqXP_025883131.10.0probable WRKY transcription factor 2
TrEMBLA0A0E0QKQ90.0A0A0E0QKQ9_ORYRU; Uncharacterized protein
STRINGORUFI08G21630.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-110WRKY DNA-binding protein 2