PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G20040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 317aa MW: 34126.5 Da PI: 4.6197 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.3 | 5.8e-16 | 179 | 221 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g ORUFI08G20040.1 179 RP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 221 67.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.483 | 165 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-6 | 173 | 184 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.12E-26 | 178 | 229 | No hit | No description |
Pfam | PF00847 | 3.9E-9 | 178 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-29 | 178 | 235 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-19 | 178 | 230 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 178 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-6 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MLPRVRFDVN PVFKRESRSC SRPLQTHTET RAQQPAARRT QTHMTNRISA MGGNPEYMIR 60 FDGHIDDASP SSATAEPPPP LPPPRPFAGR AISAEREHSV IVATLLHVIS GYRTPPPEVF 120 PAARAEVCGV CGMDQCLGCE FFAGESGVVS FDGAEKVAAA AAAAEAAGAE EEEEEEEQRP 180 WGKWAAEIRD PRRAVRKWLG TFDTAEEAAR AYDRAAVEFR GPRAKLNFPF PEQLSAHDDS 240 NGDASAAAKS DTLSPSPRSA DADEQVEHTR WPQGGGGGGG GGGGGETGDQ LWEGLQDLMQ 300 LDEGGLSWFP QSSDSWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 177 | 230 | 10 | 64 | ATERF1 |
3gcc_A | 1e-16 | 177 | 230 | 10 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004399 | 0.0 | AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649367.1 | 1e-158 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0E0QK77 | 0.0 | A0A0E0QK77_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G20040.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-22 | redox responsive transcription factor 1 |