PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G11050.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 129aa MW: 14112.3 Da PI: 10.322 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 9 | 50 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+i n r v fskRr+ ++KKA+ELS+LC+++vav ++s+ ORUFI08G11050.4 9 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSP 50 6899***********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-17 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.811 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-14 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.08E-19 | 2 | 50 | No hit | No description |
PRINTS | PR00404 | 3.5E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRRGKVKIKP IANRKARDVC FSKRRQVVIK KANELSILCG VNVAVAVLSP AVEKKKNQRG 60 QDVRLASDVN ALGLHELEAF DSNLNVIDDI VDSNDVVKNA KQTAEPQTQM SVASTLQFML 120 DGQSIAPSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004458 | 1e-129 | AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08. | |||
GenBank | AP005819 | 1e-129 | AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21. | |||
GenBank | AP009079 | 1e-129 | AP009079.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0031E03. | |||
GenBank | AP009081 | 1e-129 | AP009081.1 Oryza sativa Indica Group DNA, chromosome 8, BAC clone: K0048F05. | |||
GenBank | AP014964 | 1e-129 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY360394 | 1e-129 | AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0QH26 | 2e-85 | A0A0E0QH26_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0E0QH29 | 2e-87 | A0A0E0QH29_ORYRU; Uncharacterized protein | ||||
STRING | OPUNC08G17930.1 | 2e-63 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 2e-12 | AGAMOUS-like 31 |