PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G03000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 383aa MW: 40214.3 Da PI: 8.9696 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.8e-13 | 104 | 148 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+++++ + +lG+g+W+ I+r Rt+ q+ s+ qky ORUFI08G03000.1 104 AWSEEEHKKFLLGLSKLGKGDWRGISRNYVGSRTPTQVASHAQKY 148 7**************************9988*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 2.7E-4 | 19 | 38 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.697 | 20 | 35 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.049 | 97 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.07E-16 | 99 | 154 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-16 | 100 | 152 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.5E-10 | 101 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 103 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-9 | 104 | 149 | No hit | No description |
Pfam | PF00249 | 1.2E-10 | 104 | 148 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MTRDGALPAS GGGGAAEGPR RCSQCGHHGH NARTCTARGP VKLFGVRIGD KPPTAAAGGG 60 GGMRKSASMG SLAQLAEGGG GGGGREEGYG SDGNDDKRRK RGEAWSEEEH KKFLLGLSKL 120 GKGDWRGISR NYVGSRTPTQ VASHAQKYFI RQTNVHRRKR RSSLFDMVID DSDDQPLSRT 180 SSQEVEVEEN LEDGHPVTAP VIPPAPVPML SSSLVPPPVP AMAPVAPGPV LTSASATLPV 240 SAVAPQTDEK EQVASGSNTT ETGAAIPEVM PPYGYPMMLP PYYPPAFVPM PYYGYVPVFY 300 APPGAVQAQH EVVKPVAVHS KPPVHIDELY SMSELSLKGE AGVKNGTPNS LLPPRPIGRP 360 DRQSAFHGKG PSDGSSNGLI PAK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073681 | 0.0 | AK073681.1 Oryza sativa Japonica Group cDNA clone:J033054K18, full insert sequence. | |||
GenBank | EU837252 | 0.0 | EU837252.1 Oryza sativa Japonica Group clone KCB704E08 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651035.1 | 0.0 | transcription factor MYBS3-like | ||||
TrEMBL | A0A0E0QE88 | 0.0 | A0A0E0QE88_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6ZDM0 | 0.0 | Q6ZDM0_ORYSJ; Myb transcription factor | ||||
STRING | ORUFI08G03000.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0144000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12900 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-41 | MYB_related family protein |