PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G20030.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 371aa    MW: 40796.1 Da    PI: 8.7342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G20030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-06343365223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  ORUFI07G20030.1 343 VCPKCSKAFRDPVLLVEHVERdH 365
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.17E-76395No hitNo description
Gene3DG3DSA:4.10.1110.103.2E-46795IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.8E-10172230IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.32E-9174226No hitNo description
PfamPF014285.0E-8182221IPR000058Zinc finger, AN1-type
SMARTSM003550.45305328IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307328IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767342370IPR007087Zinc finger, C2H2
SMARTSM003558342365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280344365IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MYATRFRAPT PLTSEPCPLL FPSLLPAATT GKPPPTAGAE SSRRRGRIGN PPPLRSSGMG  60
TPEFPNLGKH CSVGDCNQID FLPFTCDRCD HNCCFNKNEI DLRQNLKLGL RMQWVFCLQH  120
RSYTSHQCPN ANQKDVTVLI CPLCAKGVRL NPNEDPNITW DTHVNSDCDP SNYQKVTKKK  180
KCPVPGCRET LTFSNTIRCK DCTKEHCLKH RFGPDHKCPG PRKPESTFPF GNMLRRSQKA  240
ESCSNSNSSS TSSSWWSSSL LTAATSFKSS AEAGMQKLST ATTQAIQKAK DGISTSSSNS  300
GDLVEQCVQC PARFSTVGAL IEHCEKSHQS NSQSSRSRVT VDVCPKCSKA FRDPVLLVEH  360
VERDHGGTSR A
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039810.0AP003981.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1019_E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644892.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0E0QA360.0A0A0E0QA36_ORYRU; Uncharacterized protein
STRINGORUFI07G20030.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]