PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G06050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 256aa    MW: 27583.4 Da    PI: 7.3943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G06050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11138185455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  ORUFI07G06050.1 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 185
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.69E-11132189No hitNo description
SuperFamilySSF474592.88E-18132201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18134200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPSLAAE LWRPHHHRHH FEASSVVTDQ GSGSRGGGGS GRRRPRSDAG PEDDDLSKVV  60
STSAASGGGG GGGQDSDAPE AKRLKPMKSS DKNDSLRTEA GTDSGNSSKA ADKNATPPEP  120
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ASVLDEIINY  180
IQSLQHQVEF LSMKLEAVNS HMINGIVAFP SKDFGAQPYN TAAGLTFDPQ TTREFAQGST  240
SEWLHMQIGN AYERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.10.0transcription factor BHLH094-like
SwissprotQ69WS30.0BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0E0Q5740.0A0A0E0Q574_ORYRU; Uncharacterized protein
TrEMBLA2YJ330.0A2YJ33_ORYSI; Uncharacterized protein
TrEMBLA3BHG50.0A3BHG5_ORYSJ; Uncharacterized protein
STRINGORUFI07G06050.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-68BIG PETAL P