PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G05160.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 407aa    MW: 44577.7 Da    PI: 4.8407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G05160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.82e-13124226199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 
                      f+k+l+ sd   + r++ p   a+       + k  ++  l ++d++g  +++ +   +k++r++l+k Wk+F ++ +  +gD+v+F+  +d++
  ORUFI07G05160.2 124 FVKTLMISDFDFRIRFSAPMADAKGVfpplvDAKAVQP--LLVKDLHGSPMTFDY--GRKGKRVTLAKVWKKFRDDMDFVDGDSVIFMrrRDDD 213
                      899********************888**9986666676..999************..*******************************766677 PP

                      .SEE..EEEEE-S CS
               B3  88 .sefelvvkvfrk 99 
                       +++el+v+v+r+
  ORUFI07G05160.2 214 dDDGELYVGVRRQ 226
                      799*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-12119232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-13119233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-8122206No hitNo description
PfamPF023622.3E-10124226IPR003340B3 DNA binding domain
SMARTSM010190.0027124227IPR003340B3 DNA binding domain
PROSITE profilePS508638.586124227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAAAAAPLAD DGDGIVDRAM WLACAAPNSG RLPAVGSVVF YFVDGHAAQF CQFPAPLLEQ  60
LAVPGPRVFL CTVAAVRLRA DALTNEAYAE ITLDPVADHD VPRLAPAPAP APAAAAGGQQ  120
LRYFVKTLMI SDFDFRIRFS APMADAKGVF PPLVDAKAVQ PLLVKDLHGS PMTFDYGRKG  180
KRVTLAKVWK KFRDDMDFVD GDSVIFMRRR DDDDDDGELY VGVRRQRTLE RPLRNTMRRY  240
RPPTPPQAAV QEAVLAAAGH AAAGERFTVA YRSRQDGDEF VVPREAVEEG LRARLTSLAE  300
VEFVWAVEDG APPIVGPRGK VTAIATGQLW RNLEIVWDGN SEMDMSANFW QVRPVEEVDI  360
SPSTPPPKRL KNCEIDDTAS TSVSVDNGDE QVPTMRQRLE ALIPDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-2813381336Auxin response factor 1
4ldy_B1e-2813381336Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646610.0AK064661.1 Oryza sativa Japonica Group cDNA clone:002-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646443.10.0B3 domain-containing protein Os07g0183200
SwissprotQ8H5070.0Y7832_ORYSJ; B3 domain-containing protein Os07g0183200
TrEMBLA0A0E0Q4W70.0A0A0E0Q4W7_ORYRU; Uncharacterized protein
TrEMBLA2YIU30.0A2YIU3_ORYSI; Uncharacterized protein
STRINGONIVA07G04110.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.15e-29auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]