PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G05060.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 269aa    MW: 28398.4 Da    PI: 7.3499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G05060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08143187554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  ORUFI07G05060.1 143 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 187
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-15136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10136192No hitNo description
PROSITE profilePS5088815.796138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14140198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6143187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAGQQPPTGG AEDDFFDHFF SIPSAAAAGA GGVGGFGSGD HHPFPLALSL DAEGAGAARR  60
LLDGGHDGGR TDRDPVQLAG LFAPVFGAAA GVQPPHLRAP PPPQVFHAQP KPGEGAMAAP  120
QPQQPPAPRP KVRARRGQAT DPHSIAERLR RERIAERMRA LQDLVPNTNK TDRAAMLDEI  180
LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPISVKVAK LMEEDIGAAM QFLQSKALCM  240
MPISLAMAIY DTQHSQDGHS VKPEPNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644607.11e-157transcription factor UNE12
SwissprotO227687e-64UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0E0Q4V60.0A0A0E0Q4V6_ORYRU; Uncharacterized protein
STRINGORUFI07G05060.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]