PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 284aa MW: 30817.5 Da PI: 6.7849 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H ORUFI07G00180.1 61 YTCSFCRREFRSAQALGGHMNVH 83 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 58 | 88 | No hit | No description |
Pfam | PF13912 | 1.8E-5 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.219 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDAAAMERMA KHYWALWGAG VRSGWPAAAH GGGAEPSWEE KAFAQDAAGH LGGCVWPPRS 60 YTCSFCRREF RSAQALGGHM NVHRRDRARL RQCDDDDDDP IPPTVSICAP PPPPPPLLPA 120 AAAAPDSPSP PSLLLQISSP KSTTADHHQN HQQLQLQGTN SSPNSCIATI IKESRNKARL 180 FITTMPAPAP ATTHDLGLGG GKDDDDSISI SMEEIRRKRR RVDQPLTPTP SYSSERERRR 240 EDDPAAADAS NNKVIPSSSI LVNQLAMDMV GRQEIDLELR LGST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 220 | RKRRR |
2 | 217 | 221 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645557.1 | 1e-156 | zinc finger protein 10 | ||||
TrEMBL | A0A0E0AEX1 | 0.0 | A0A0E0AEX1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q337 | 0.0 | A0A0E0Q337_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM07G00170.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI07G00180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-22 | C2H2 family protein |