PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G29160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SRS | ||||||||
Protein Properties | Length: 243aa MW: 23266.1 Da PI: 6.2374 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 90.6 | 3.4e-28 | 73 | 170 | 58 | 154 |
DUF702 58 aasskaaasaaeaaskrkrelkskkqs.alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 aa+++aaa+aa+aaskr+rel + +++t ++ +++++ ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+ ORUFI06G29160.1 73 AANNSAAAAAAAAASKRPRELVRTLGRlPSANTAMVATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDH 166 556667777799999****99444333033344445555555667788********************************************** PP DUF702 151 Glee 154 G+++ ORUFI06G29160.1 167 GPAD 170 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.9E-24 | 76 | 169 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 4.3E-20 | 120 | 168 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAGFSLRGGG GGGGGGGGVG GGGGGGRGGE RGGGGDHAIG ADSLFLYARG AAAAAADTAG 60 SGGGGXALFR GAAANNSAAA AAAAAASKRP RELVRTLGRL PSANTAMVAT TTSSGEGDGR 120 FPPELSVEAV FRCVRIGAVD EADAELAYQT AVSIGGHTFK GILRDHGPAD EAAGQLPPSS 180 AEYHQLTGQG REESSPAGSS EGVGGGHGAA TAATSAAVLM DPYPTPIGAF AAGTQFFPHN 240 PRT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 26 | RGGGGGGGGGGGVGGGGGGGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 0.0 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 0.0 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642175.1 | 2e-99 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_025881792.1 | 2e-99 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0E0Q2K7 | 1e-162 | A0A0E0Q2K7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G29160.1 | 1e-163 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-21 | Lateral root primordium (LRP) protein-related |