PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G25070.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 266aa    MW: 28539.2 Da    PI: 9.3971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G25070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-152576155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ORUFI06G25070.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 76
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-182586IPR016177DNA-binding domain
PfamPF008472.5E-102576IPR001471AP2/ERF domain
CDDcd000183.97E-242586No hitNo description
PROSITE profilePS5103219.0452684IPR001471AP2/ERF domain
SMARTSM003801.5E-332690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-182685IPR001471AP2/ERF domain
PRINTSPR003676.6E-52738IPR001471AP2/ERF domain
PRINTSPR003676.6E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKSMTRQEFI ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  60
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV DSILNSDLPV GGGAATRASK FPSDPSLPLP  120
SPAMQPSEKD YWSLLALHYH HHQQQQQQQQ QQQFPASAFD TYGCSSGVNV DFTMGTSSHS  180
GSNSNSSSSS AIWGTAAGAA MGRQQNGGSS NKQSNSYSGN NIPYAAAAAM TSGSALYGGS  240
TGSNGTWVAS NTSTAPHFYN YLFGME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641575.11e-168AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0E0Q1190.0A0A0E0Q119_ORYRU; Uncharacterized protein
STRINGORUFI06G25070.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-56AINTEGUMENTA-like 5