PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G19350.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 263aa    MW: 27138.3 Da    PI: 4.5754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G19350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-185096252
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  ORUFI06G19350.1 50 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 96
                     69****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3150107IPR001471AP2/ERF domain
SMARTSM003801.5E-3350113IPR001471AP2/ERF domain
PfamPF008472.7E-125096IPR001471AP2/ERF domain
PROSITE profilePS5103222.99850107IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2150107IPR016177DNA-binding domain
CDDcd000181.69E-1851107No hitNo description
PRINTSPR003673.7E-105162IPR001471AP2/ERF domain
PRINTSPR003673.7E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPEYELAACS PASPSSSASS TSTPPSPGGE AAARCGEKRG RGGGGGRHPT YRGVRMRAWG  60
KWVSEIREPR KKSRIWLGTF PTPEMAARAH DAAALVVKGP AAVLNFPGAA ASLPRPASAA  120
PRDVQAAAAR AAAMALDAVV PAPPSPPPPL MPPQASPSEA ARAHALVAQV DQDDDDEELE  180
EIVELPPIDE LDAAAELVFA SSGATTFHYD PAADQPWYDQ PAACLQDGGG GGIAVHDALG  240
FELDHVWADG VVASGFGALL WNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1843107772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642814.20.0dehydration-responsive element-binding protein 3
TrEMBLA0A0E0PZ290.0A0A0E0PZ29_ORYRU; Uncharacterized protein
TrEMBLQ5Z9C90.0Q5Z9C9_ORYSJ; Putative Ap21
STRINGORUFI06G19350.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2717333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-27ERF family protein