PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G19010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 502aa    MW: 53308.8 Da    PI: 8.7679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G19010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.1e-053944311254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  ORUFI06G19010.1 394 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 431
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-8392440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-11392445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-5392435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MPDDRQRPPA ARFPLHHCNL LTHTPSKHSL SLASSLHHKK KLASQETEDR SRFRIEIITS  60
SWSSIMGDHQ MMHAAPAAMY NGGGGTTSSH GVWWSNAVGV PAAATCSTTT ELAGYTAWSS  120
ALAAGYDGMV ADNGGKQAKS TTTASSESPG NNSSVTFQEP ASIPDPAAVA AVPQPGLAGF  180
TDWTQPFMNN GAGLHEFLQD GHHDMSASSL MNHSSNNLAL QQAGHHHELL SSFGSDLLLS  240
PTSPYGGFQS SLLRSLMEPT AKQQQQQPAL AGLQQYHQYQ QQMGHTPAAA AKFAQAVGAR  300
DSLQFTNDAP FWNPSAGFGM PAAVAVAAAA AQDQASVRSA KRSSPAPPRA AATLALKTAM  360
EGVGDSSSVI TKKETAFKKP RLETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV  420
LHETIEYIKF LHDQVGALSA PYLKNGAHQV PHLKNSSPDK SKHGEISLKG RGLCLVPISS  480
TFAVASEVPV ELWTPFGANF IR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693660.0AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0E0PYZ30.0A0A0E0PYZ3_ORYRU; Uncharacterized protein
STRINGORUFI06G19010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-47bHLH family protein