PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G14980.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 31662.2 Da    PI: 10.1968
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G14980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.66.1e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +rien++ rqvtfskRr g++KKA+EL +LCda+v v++fsstg+ly+ys+
  ORUFI06G14980.1  9 SRIENTTSRQVTFSKRRSGLFKKAKELAILCDAQVGVLVFSSTGRLYDYSN 59
                     59***********************************************95 PP
2K-box79.21e-2680169998
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       ++++a+ +q e+++Lk++++nL+ +qR+ll  dL+ L+ ++L++Le+qLe+sl ++R kK+++++eqi+el+kke+ +++en++L++++
  ORUFI06G14980.1  80 SASTEAKFWQAEAERLKQQLHNLEGSQRQLLAHDLSGLEWNDLKSLENQLETSLHNVRLKKDKIMVEQIQELRKKENIMHRENMELHREF 169
                      578899*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.987161IPR002100Transcription factor, MADS-box
CDDcd002654.45E-39377No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-30382IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2581169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.41785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007584Biological Processresponse to nutrient
GO:0010167Biological Processresponse to nitrate
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVRGKTVISR IENTTSRQVT FSKRRSGLFK KAKELAILCD AQVGVLVFSS TGRLYDYSNS  60
SMRSVIERYQ QIKDGQQLMS ASTEAKFWQA EAERLKQQLH NLEGSQRQLL AHDLSGLEWN  120
DLKSLENQLE TSLHNVRLKK DKIMVEQIQE LRKKENIMHR ENMELHREFN MIRQDSVNFQ  180
RKVYGKQDVN GGQGSSVTQN TNTPDDADEI RLELSQPQVP DEKPEAAAKV KKSTILCLDL  240
IKVKTFPGKR SKLSQEERLI NKRLAMTYLS QVKIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15171171MEF2C
5f28_B1e-15171171MEF2C
5f28_C1e-15171171MEF2C
5f28_D1e-15171171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056462e-96AP005646.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1077E08.
GenBankAP0149622e-96AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-96CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641670.11e-168MADS-box transcription factor 23-like
SwissprotQ6EP493e-77MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0PXK70.0A0A0E0PXK7_ORYRU; Uncharacterized protein
STRINGORUFI06G14980.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1707322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-73AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]